engine: Holme-Kim network generator (powerlaw_cluster_graph port)
Preferential attachment via an attachment pool that holds one entry per edge endpoint, so uniform draws are degree-proportional: that is the whole hub-forming mechanism. A triangle step closes friend-of-a-friend links with probability triangleProb, giving friend-group clustering. Semantics ported from networkx, NOT its RNG stream (per the handoff, no cross-language number matching). Tests are property-based: size, edge bounds, connectivity, hub formation across seeds, plus exact determinism for a fixed seed. 'go test ./...', gofmt and golangci-lint all clean.
This commit is contained in:
parent
33a85cb720
commit
7f06ea0d6f
2 changed files with 218 additions and 0 deletions
102
internal/engine/holmekim.go
Normal file
102
internal/engine/holmekim.go
Normal file
|
|
@ -0,0 +1,102 @@
|
||||||
|
package engine
|
||||||
|
|
||||||
|
import (
|
||||||
|
"fmt"
|
||||||
|
"math/rand/v2"
|
||||||
|
"slices"
|
||||||
|
)
|
||||||
|
|
||||||
|
// HolmeKim generates a random social network of numNodes nodes using the
|
||||||
|
// Holme-Kim "powerlaw cluster" model, a port of networkx's
|
||||||
|
// powerlaw_cluster_graph. Each new node attaches to edgesPerNode existing
|
||||||
|
// nodes by preferential attachment (popular nodes attract more links, which
|
||||||
|
// produces hubs), and after each attachment a triangle is closed with
|
||||||
|
// probability triangleProb (a friend of a friend becomes a friend, which
|
||||||
|
// produces the clustering of real friend groups).
|
||||||
|
//
|
||||||
|
// The port preserves the model's semantics, not networkx's random number
|
||||||
|
// stream: the same seed gives the same graph here, but not the same graph
|
||||||
|
// as Python.
|
||||||
|
func HolmeKim(numNodes, edgesPerNode int, triangleProb float64, rng *rand.Rand) (*Graph, error) {
|
||||||
|
if edgesPerNode < 1 || edgesPerNode >= numNodes {
|
||||||
|
return nil, fmt.Errorf("holme-kim: need 1 <= edgesPerNode < numNodes, got edgesPerNode=%d numNodes=%d",
|
||||||
|
edgesPerNode, numNodes)
|
||||||
|
}
|
||||||
|
if triangleProb < 0 || triangleProb > 1 {
|
||||||
|
return nil, fmt.Errorf("holme-kim: need 0 <= triangleProb <= 1, got %v", triangleProb)
|
||||||
|
}
|
||||||
|
|
||||||
|
graph := NewGraph(numNodes)
|
||||||
|
|
||||||
|
// One entry per edge endpoint, so sampling uniformly from this list is
|
||||||
|
// sampling nodes proportionally to their degree: that is the whole
|
||||||
|
// "preferential attachment" trick. Seeded with the first edgesPerNode
|
||||||
|
// nodes so the earliest arrivals have someone to connect to.
|
||||||
|
attachmentPool := make([]int, edgesPerNode)
|
||||||
|
for node := range attachmentPool {
|
||||||
|
attachmentPool[node] = node
|
||||||
|
}
|
||||||
|
|
||||||
|
for newNode := edgesPerNode; newNode < numNodes; newNode++ {
|
||||||
|
// Where this node could attach: edgesPerNode distinct existing
|
||||||
|
// nodes, drawn degree-proportionally. Consumed from the end.
|
||||||
|
candidates := degreeProportionalSample(attachmentPool, edgesPerNode, rng)
|
||||||
|
|
||||||
|
target := candidates[len(candidates)-1]
|
||||||
|
candidates = candidates[:len(candidates)-1]
|
||||||
|
graph.AddEdge(newNode, target)
|
||||||
|
attachmentPool = append(attachmentPool, target)
|
||||||
|
|
||||||
|
for edgesAdded := 1; edgesAdded < edgesPerNode; {
|
||||||
|
// Triangle step: with probability triangleProb, also link to a
|
||||||
|
// friend of the node we just attached to.
|
||||||
|
if rng.Float64() < triangleProb {
|
||||||
|
var mutualCandidates []int
|
||||||
|
for _, friendOfTarget := range graph.Neighbors(target) {
|
||||||
|
if friendOfTarget != newNode && !graph.HasEdge(newNode, friendOfTarget) {
|
||||||
|
mutualCandidates = append(mutualCandidates, friendOfTarget)
|
||||||
|
}
|
||||||
|
}
|
||||||
|
if len(mutualCandidates) > 0 {
|
||||||
|
mutualFriend := mutualCandidates[rng.IntN(len(mutualCandidates))]
|
||||||
|
graph.AddEdge(newNode, mutualFriend)
|
||||||
|
attachmentPool = append(attachmentPool, mutualFriend)
|
||||||
|
edgesAdded++
|
||||||
|
continue
|
||||||
|
}
|
||||||
|
}
|
||||||
|
// Otherwise (or if no triangle was possible): plain
|
||||||
|
// preferential attachment to the next candidate. Mirrors
|
||||||
|
// networkx, including the quirk that a candidate already linked
|
||||||
|
// via a triangle step counts as an attempt without adding an
|
||||||
|
// edge, so a node can end up with slightly fewer than
|
||||||
|
// edgesPerNode edges.
|
||||||
|
target = candidates[len(candidates)-1]
|
||||||
|
candidates = candidates[:len(candidates)-1]
|
||||||
|
graph.AddEdge(newNode, target)
|
||||||
|
attachmentPool = append(attachmentPool, target)
|
||||||
|
edgesAdded++
|
||||||
|
}
|
||||||
|
|
||||||
|
// The new node enters the pool once per edge slot, like networkx.
|
||||||
|
for range edgesPerNode {
|
||||||
|
attachmentPool = append(attachmentPool, newNode)
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return graph, nil
|
||||||
|
}
|
||||||
|
|
||||||
|
// degreeProportionalSample draws sampleSize distinct nodes from the pool.
|
||||||
|
// The pool holds one entry per edge endpoint, so nodes with more edges are
|
||||||
|
// proportionally more likely to be drawn. networkx returns a Python set
|
||||||
|
// here; we keep a slice in draw order so the result is deterministic.
|
||||||
|
func degreeProportionalSample(pool []int, sampleSize int, rng *rand.Rand) []int {
|
||||||
|
sample := make([]int, 0, sampleSize)
|
||||||
|
for len(sample) < sampleSize {
|
||||||
|
drawn := pool[rng.IntN(len(pool))]
|
||||||
|
if !slices.Contains(sample, drawn) {
|
||||||
|
sample = append(sample, drawn)
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return sample
|
||||||
|
}
|
||||||
116
internal/engine/holmekim_test.go
Normal file
116
internal/engine/holmekim_test.go
Normal file
|
|
@ -0,0 +1,116 @@
|
||||||
|
package engine
|
||||||
|
|
||||||
|
import (
|
||||||
|
"slices"
|
||||||
|
"testing"
|
||||||
|
)
|
||||||
|
|
||||||
|
// The generator is random, so these are property tests: instead of pinning
|
||||||
|
// exact graphs we assert what must hold for ANY valid output (size, edge
|
||||||
|
// bounds, connectivity, hubs) across several seeds, plus exact determinism
|
||||||
|
// for a fixed seed. The prototype's values: 120 students, 3 edges per new
|
||||||
|
// student, triangle probability 0.45.
|
||||||
|
|
||||||
|
const (
|
||||||
|
testNumNodes = 120
|
||||||
|
testEdgesPerNode = 3
|
||||||
|
testTriangleProb = 0.45
|
||||||
|
)
|
||||||
|
|
||||||
|
func TestHolmeKimRejectsInvalidParameters(t *testing.T) {
|
||||||
|
tests := []struct {
|
||||||
|
name string
|
||||||
|
numNodes int
|
||||||
|
edgesPerNode int
|
||||||
|
triangleProb float64
|
||||||
|
}{
|
||||||
|
{name: "zero edges per node", numNodes: 10, edgesPerNode: 0, triangleProb: 0.5},
|
||||||
|
{name: "edges per node not below node count", numNodes: 3, edgesPerNode: 3, triangleProb: 0.5},
|
||||||
|
{name: "negative triangle probability", numNodes: 10, edgesPerNode: 2, triangleProb: -0.1},
|
||||||
|
{name: "triangle probability above one", numNodes: 10, edgesPerNode: 2, triangleProb: 1.1},
|
||||||
|
}
|
||||||
|
for _, testCase := range tests {
|
||||||
|
t.Run(testCase.name, func(t *testing.T) {
|
||||||
|
_, err := HolmeKim(testCase.numNodes, testCase.edgesPerNode, testCase.triangleProb, newRand(1))
|
||||||
|
if err == nil {
|
||||||
|
t.Errorf("HolmeKim(%d, %d, %v) accepted invalid parameters",
|
||||||
|
testCase.numNodes, testCase.edgesPerNode, testCase.triangleProb)
|
||||||
|
}
|
||||||
|
})
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
func TestHolmeKimDeterministicForSameSeed(t *testing.T) {
|
||||||
|
first, err := HolmeKim(testNumNodes, testEdgesPerNode, testTriangleProb, newRand(17))
|
||||||
|
if err != nil {
|
||||||
|
t.Fatal(err)
|
||||||
|
}
|
||||||
|
second, err := HolmeKim(testNumNodes, testEdgesPerNode, testTriangleProb, newRand(17))
|
||||||
|
if err != nil {
|
||||||
|
t.Fatal(err)
|
||||||
|
}
|
||||||
|
for node := range testNumNodes {
|
||||||
|
if !slices.Equal(first.Neighbors(node), second.Neighbors(node)) {
|
||||||
|
t.Fatalf("node %d: neighbour lists differ for identical seeds: %v vs %v",
|
||||||
|
node, first.Neighbors(node), second.Neighbors(node))
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
func TestHolmeKimProperties(t *testing.T) {
|
||||||
|
for _, seed := range []uint64{1, 2, 17} {
|
||||||
|
graph, err := HolmeKim(testNumNodes, testEdgesPerNode, testTriangleProb, newRand(seed))
|
||||||
|
if err != nil {
|
||||||
|
t.Fatal(err)
|
||||||
|
}
|
||||||
|
|
||||||
|
if got := graph.NumNodes(); got != testNumNodes {
|
||||||
|
t.Errorf("seed %d: NumNodes() = %d, want %d", seed, got, testNumNodes)
|
||||||
|
}
|
||||||
|
|
||||||
|
// Every new node attempts exactly edgesPerNode attachments; some
|
||||||
|
// may collide with an edge a triangle step already added, so the
|
||||||
|
// count is bounded, not exact.
|
||||||
|
grownNodes := testNumNodes - testEdgesPerNode
|
||||||
|
minEdges, maxEdges := grownNodes, grownNodes*testEdgesPerNode
|
||||||
|
if got := graph.NumEdges(); got < minEdges || got > maxEdges {
|
||||||
|
t.Errorf("seed %d: NumEdges() = %d, want within [%d, %d]", seed, got, minEdges, maxEdges)
|
||||||
|
}
|
||||||
|
|
||||||
|
if !isConnected(graph) {
|
||||||
|
t.Errorf("seed %d: graph is not connected", seed)
|
||||||
|
}
|
||||||
|
|
||||||
|
// Preferential attachment must produce hubs: some node far better
|
||||||
|
// connected than the attachment minimum.
|
||||||
|
maxDegree := 0
|
||||||
|
for node := range graph.NumNodes() {
|
||||||
|
maxDegree = max(maxDegree, graph.Degree(node))
|
||||||
|
}
|
||||||
|
if maxDegree < 3*testEdgesPerNode {
|
||||||
|
t.Errorf("seed %d: max degree %d, want at least %d (no hubs formed)",
|
||||||
|
seed, maxDegree, 3*testEdgesPerNode)
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
// isConnected reports whether every node is reachable from node 0,
|
||||||
|
// via breadth-first search.
|
||||||
|
func isConnected(graph *Graph) bool {
|
||||||
|
visited := make([]bool, graph.NumNodes())
|
||||||
|
visited[0] = true
|
||||||
|
frontier := []int{0}
|
||||||
|
visitedCount := 1
|
||||||
|
for len(frontier) > 0 {
|
||||||
|
current := frontier[0]
|
||||||
|
frontier = frontier[1:]
|
||||||
|
for _, neighbor := range graph.Neighbors(current) {
|
||||||
|
if !visited[neighbor] {
|
||||||
|
visited[neighbor] = true
|
||||||
|
visitedCount++
|
||||||
|
frontier = append(frontier, neighbor)
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return visitedCount == graph.NumNodes()
|
||||||
|
}
|
||||||
Loading…
Add table
Add a link
Reference in a new issue