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Feat/decomposition #19

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JustinZeus merged 38 commits from feat/decomposition into main 2026-03-01 22:55:33 +01:00
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17
.claude/settings.json Normal file
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@ -0,0 +1,17 @@
{
"permissions": {
"allow": [
"Bash(wc -l /home/jv/src/personal/playground/scholar_scraper/scholar-scraper/frontend/src/features/settings/SettingsAdminPanel.vue /home/jv/src/personal/playground/scholar_scraper/scholar-scraper/frontend/src/features/settings/components/Admin*.vue)",
"Read(//home/jv/src/personal/playground/scholar_scraper/scholar-scraper/**)",
"Bash(while read line rest)",
"Bash(do echo \"$line $rest\")",
"Bash(done)",
"Bash(grep -c 'def test_' tests/unit/*.py tests/unit/**/*.py tests/integration/*.py)",
"Bash(sort -t: -k2 -rn)",
"Bash(wc -l frontend/src/pages/*.vue)"
],
"additionalDirectories": [
"/home/jv/src/personal/playground/scholar_scraper/scholar-scraper/frontend/src"
]
}
}

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.github/workflows/release.yml vendored
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@ -19,9 +19,10 @@ jobs:
- uses: actions/setup-python@v5
with:
python-version: "3.12"
- run: pip install python-semantic-release
- uses: astral-sh/setup-uv@v4
- run: uv sync --extra dev
- name: Semantic Release
id: release
run: semantic-release publish
run: uv run semantic-release publish
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

193
DECOMPOSITION_CLEANUP.md
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# Decomposition Cleanup — 3-Pass Fix Prompt
You are working on the scholarr repository (`feat/decomposition` branch). A decomposition refactor split oversized files into focused modules. An audit found residual issues. Fix them in 3 sequential passes.
**Read `agents.md` before starting.** Key rules:
- Function length: 50 lines max
- File length: 400 target, 600 hard ceiling (kwargs-heavy signatures are acceptable overage)
- No dead code, no duplicate boilerplate, no backward-compatibility shims
- All business logic in `app/services/<domain>/`
- Use `structured_log()` for domain logging
**Constraints for every pass:**
- Pure refactoring — no behavioral changes
- All tests must pass after each pass: `docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app python -m pytest`
- Commit after each pass using conventional commit format
---
## Pass 1: Naming, DRY, and Dead Code
**1a. Rename `_int_or_default` → `int_or_default`**
This function in `app/services/ingestion/run_completion.py:38` is imported externally by `app/services/ingestion/application.py:25`, making it public API with a private-convention name.
- Rename the definition in `run_completion.py` (line 38)
- Update all internal call sites in `run_completion.py` (lines 71, 350, 375)
- Update the import in `application.py` (line 25) and call sites (lines 138, 336, 342)
**1b. Consolidate duplicate functions between `pdf_queue.py` and `pdf_queue_resolution.py`**
Three functions exist with identical signatures in both files:
| Function | `pdf_queue.py` | `pdf_queue_resolution.py` |
|---|---|---|
| `_utcnow()` | line 46 | line 33 |
| `_event_row()` | line 150 | line 39 |
| `_queued_job()` | line 165 | line 60 |
Fix: Keep these in `pdf_queue.py` (the parent module). Have `pdf_queue_resolution.py` import them from `pdf_queue.py`. Since `pdf_queue.py` already imports from `pdf_queue_resolution.py`, check for circular imports — if importing `_utcnow`, `_event_row`, `_queued_job` from `pdf_queue` into `pdf_queue_resolution` would create a cycle, extract them to a shared `pdf_queue_common.py` instead.
Also deduplicate the PDF status constants (`PDF_STATUS_QUEUED`, `PDF_STATUS_RUNNING`, `PDF_STATUS_RESOLVED`, `PDF_STATUS_FAILED`) that are duplicated between `pdf_queue.py` (lines 23-27) and `pdf_queue_resolution.py` (lines 20-23). Keep them in `pdf_queue.py` only.
**1c. Consolidate `_effective_request_delay_seconds` duplication**
`scheduler.py` (lines 32-42) and `queue_runner.py` (line 23-28) both define `_effective_request_delay_seconds` with slightly different signatures. The `queue_runner.py` version takes an explicit `floor` parameter (cleaner). Keep the `queue_runner.py` version. In `scheduler.py`, delete `_request_delay_floor_seconds()` and `_effective_request_delay_seconds()`, and instead import from `queue_runner`:
```python
from app.services.ingestion.queue_runner import _effective_request_delay_seconds
```
At the call site in `scheduler.py`, pass `floor=_request_delay_floor_seconds_value` where needed (inline the floor computation or keep it as a one-liner).
Actually — since `_effective_request_delay_seconds` would now be imported externally, rename it to `effective_request_delay_seconds` (drop the underscore) in `queue_runner.py`.
Commit message: `refactor: fix naming, remove duplicate code from decomposition`
---
## Pass 2: Function length — ingestion core (6 worst offenders)
All 6 functions are >75 lines. Extract helpers to bring each under 50 lines. Below is specific guidance for each.
**2a. `EnrichmentRunner.enrich_pending_publications` — 133 lines → ≤50** (`enrichment.py:47-179`)
This function does 4 things: load publications, set up client, batch-loop with API calls, run dedup sweep. Extract:
1. `_load_unenriched_publications(db_session, *, run_id) → list[Publication]` — lines 66-87 (query + return)
2. `_enrich_batch(self, db_session, *, batch, run_id, client, openalex_works, now) → bool` — lines 142-166 (per-publication enrichment loop; return False if canceled). This inner loop iterates `batch`, calls `_discover_identifiers_for_enrichment`, and applies the match. The caller handles the outer batch loop and API call.
3. `_flush_and_sweep_duplicates(db_session, *, run_id)` — lines 167-179 (flush + dedup sweep)
The main function becomes: load pubs → early return → create client → batch loop (API call + `_enrich_batch`) → `_flush_and_sweep_duplicates`.
**2b. `EnrichmentRunner.enrich_publications_with_openalex` — 64 lines → ≤50** (`enrichment.py:260-323`)
Extract:
1. `_sanitize_titles(publications) → list[str]` — lines 279-286 (title cleaning loop)
The outer batch loop + match logic stays in the main method, which should now fit in ~45 lines.
**2c. `ScholarIngestionService.run_for_user` — 99 lines → ≤50** (`application.py:525-623`)
This function calls `initialize_run`, builds paging/threshold kwargs, calls `run_scholar_iteration`, `complete_run_for_user`, handles enrichment, commits, and logs. Extract:
1. `_run_iteration_and_complete(self, db_session, *, run, scholars, user_id, start_cstart_map, paging, thresholds, auto_queue_continuations, queue_delay_seconds, idempotency_key) → tuple[RunProgress, RunFailureSummary, RunAlertSummary]` — lines 579-599 (the iteration + completion block). This calls `run_scholar_iteration` and `complete_run_for_user` and returns their results.
2. `_inline_enrich_and_finalize(self, db_session, *, run, user_settings, intended_final_status) → None` — lines 604-614 (enrichment + status fixup + commit). This calls `enrich_pending_publications`, handles the exception, fixes status, and commits.
**2d. `ScholarIngestionService.execute_run` — 88 lines → ≤50** (`application.py:374-461`)
Extract:
1. `_execute_run_body(self, db_session, session_factory, *, run_id, user_id, scholars, start_cstart_map, paging, thresholds, auto_queue_continuations, queue_delay_seconds, idempotency_key) → None` — lines 411-457 (the try-body: prepare, iterate, complete, commit, log, spawn enrichment task). The outer `execute_run` handles kwargs resolution and the `async with session_factory()` + `except`.
Or alternatively, the `_resolve_paging_kwargs` / `_threshold_kwargs` calls can be lifted into the caller or inlined since they're trivial dict builders — this alone may shave enough lines. Consider whether the kwargs signature itself is the bulk (it is — 22 lines of signature). If so, this function may be acceptable as-is per the kwargs-exception rule. Use your judgment: if the function body (excluding signature and kwargs resolution) is ≤50 lines, document it as acceptable and move on.
**2e. `run_scholar_iteration` — 84 lines → ≤50** (`scholar_processing.py:531-614`)
This has two clear phases: pass 1 (breadth-first, lines 560-584) and pass 2 (depth, lines 586-614). Extract:
1. `_run_first_pass(db_session, *, scholars, pagination, run, user_id, start_cstart_map, scholar_kwargs, request_delay_seconds, queue_delay_seconds, progress) → dict[int, int]` — the breadth-first loop (lines 560-584), returns `first_pass_cstarts`
2. `_run_depth_pass(db_session, *, scholars, first_pass_cstarts, pagination, run, user_id, scholar_kwargs, request_delay_seconds, remaining_max, auto_queue_continuations, queue_delay_seconds, progress) → None` — the depth loop (lines 591-613)
The main function becomes: build kwargs → call pass 1 → compute remaining → call pass 2 → return progress.
**2f. `QueueJobRunner._finalize_queue_job_after_run` — 79 lines → ≤50** (`queue_runner.py:284-362`)
Two branches: success path (lines 287-311) and failure path (lines 312-362). Extract:
1. `_finalize_successful_queue_job(self, session, job, run_summary) → None` — success path
2. `_finalize_failed_queue_job(self, session, job, run_summary) → None` — failure path
The main function opens a session, branches on `failed_count`, and delegates.
Commit message: `refactor: extract helpers from long functions in ingestion core`
---
## Pass 3: Function length — remaining violations (10 functions, 58-75 lines)
**3a. `run_manual` — 105 lines → ≤50** (`app/api/routers/runs.py:183-287`)
This route handler has a large try block. Extract:
1. `_start_manual_run(db_session, *, current_user, ingest_service, idempotency_key) → tuple[CrawlRun, list, dict]` — lines 205-221 (initialize_run call with all the settings kwargs)
2. `_spawn_background_execution(ingest_service, *, run, current_user, scholars, start_cstart_map, user_settings, idempotency_key) → None` — lines 226-249 (create_task + background_tasks management)
3. `_manual_run_success_response(request, *, run, idempotency_key, db_session, current_user) → dict` — lines 251-265 (build success payload)
The route handler becomes: load safety → check disabled → check idempotency → try: start → spawn → respond; except: handle errors.
**3b. `PaginationEngine._paginate_loop` — 75 lines → ≤50** (`pagination.py:276-350`)
Extract:
1. `_upsert_page_publications(self, db_session, *, run, scholar, publications, seen_canonical, state, upsert_publications_fn)` — the dedup + upsert block (appears twice: lines 294-302 and 339-347). Deduplicate by extracting a single helper called from both places.
This should bring the loop body under 50 lines.
**3c. `PaginationEngine.fetch_and_parse_all_pages` — 72 lines → ≤50** (`pagination.py:415-486`)
Most of the length is the kwargs-heavy calls. Check if the function body (excluding the 17-line signature) is ≤50 lines — it should be ~55. Extract:
1. Move the `_short_circuit_initial_page` + `_build_loop_state` + `_paginate_loop` + `_result_from_pagination_state` sequence into a helper `_paginate_from_initial_page(self, *, scholar, run, db_session, state, ...) → PagedParseResult` if needed. Or accept this as kwargs-acceptable overage and document why.
**3d. `PageFetcher.fetch_and_parse_with_retry` — 70 lines → ≤50** (`page_fetch.py:148-217`)
Extract:
1. `_classify_attempt(parsed_page, *, network_attempts, rate_limit_attempts) → tuple[int, int, int]` — lines 173-183 (attempt counter logic, returns updated network_attempts, rate_limit_attempts, total_attempts)
This plus the existing `_should_retry` and `_sleep_backoff` helpers should bring the loop under 50 lines.
**3e. `complete_run_for_user` — 66 lines → ≤50** (`run_completion.py:265-330`)
Extract:
1. `_log_alert_threshold_warnings(*, user_id, run, failure_summary, alert_summary) → None` — lines 284-313 (the 3 if-blocks that log threshold warnings)
The main function becomes: summarize → build alerts → log warnings → apply safety → resolve status → finalize → return. ~35 lines.
**3f. `process_scholar` — 61 lines → ≤50** (`scholar_processing.py:343-403`)
The function body is mostly kwargs pass-through. Check if the actual body (excluding the 18-line signature) is ≤50 lines — it's ~43 lines of body. If so, this is acceptable under the kwargs exception. Document and move on.
**3g. `_fetch_and_prepare_scholar_result` — 59 lines → ≤50** (`scholar_processing.py:406-464`)
Same analysis: 16-line signature, 43-line body. If the body alone is ≤50, this is kwargs-acceptable. Document and move on.
**3h. `_perform_live_author_search` — 60 lines → ≤50** (`author_search.py:459-518`)
18-line signature, 42-line body. Kwargs-acceptable. Document and move on.
**3i. `search_author_candidates` — 60 lines → ≤50** (`author_search.py:521-580`)
19-line signature, 41-line body. Kwargs-acceptable. Document and move on.
**3j. `ScholarIngestionService.initialize_run` — 58 lines → ≤50** (`application.py:315-372`)
20-line signature, 38-line body. Kwargs-acceptable. Document and move on.
Commit message: `refactor: extract helpers from remaining long functions`
---
## Verification (after all 3 passes)
```bash
# No function exceeds 50 lines (body, excluding kwargs signatures that exceed the limit)
# Run the AST checker from the audit to verify
# All tests pass
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app python -m pytest
# Linting
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app ruff check .
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app ruff format --check .
# Type checking
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app mypy app/
```

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DECOMPOSITION_SLICES.md
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# Scholarr Decomposition Slices
## How to use this file
This file contains self-contained decomposition prompts ("slices") to bring the codebase into compliance with `agents.md` file size rules. Each slice is an independent task for an LLM executor.
**Rules from `agents.md`:**
- File length: 400 lines target, 600 lines hard ceiling
- Slightly exceeding the 600-line ceiling is acceptable when the excess is driven by verbose keyword-argument signatures (named parameters), not by business logic density
- Function length: 50 lines max
- All business logic in `app/services/<domain>/`
- Read `agents.md` fully before starting any slice
**Execution protocol:**
1. Pick the next incomplete slice in order (slices depend on prior ones)
2. Read the prompt section — it contains everything you need
3. Read all source files mentioned before making changes
4. Make the changes described — no business logic changes, only file reorganization
5. Verify: all imports resolve, all tests pass
6. Commit with the specified message
---
## Progress
| # | Slice | Status |
|---|-------|--------|
| 1 | Schema split | **DONE** |
| 2 | Ingestion: pagination + publication upsert | **DONE** |
| 3 | Ingestion: enrichment + scholar processing + run completion | **DONE** |
| 4 | Scholars service + PDF queue | **DONE** |
| 5 | Routers + scheduler | **DONE** |
---
## Slice 1: Split `app/api/schemas.py` into domain packages — DONE
Completed. The 945-line `app/api/schemas.py` was split into `app/api/schemas/` package:
| File | Lines | Contents |
|---|---|---|
| `common.py` | 39 | `ApiMeta`, `ApiErrorData`, `ApiErrorEnvelope`, `MessageData`, `MessageEnvelope` |
| `auth.py` | 73 | `SessionUserData`, `AuthMe*`, `CsrfBootstrap*`, `Login*`, `ChangePasswordRequest` |
| `scholars.py` | 153 | `ScholarItem*`, `ScholarSearch*`, `ScholarExport*`, `DataExport*`, `DataImport*` |
| `publications.py` | 151 | `DisplayIdentifierData`, `PublicationItem*`, `MarkAll*`, `MarkSelected*`, `RetryPublication*`, `TogglePublication*` |
| `runs.py` | 226 | `RunListItem*`, `RunSummary*`, `RunDebug*`, `RunScholarResult*`, `RunDetail*`, `ManualRun*`, `Queue*`, `ScrapeSafety*` |
| `admin.py` | 289 | All `Admin*` models including PDF queue, repair, near-duplicate schemas |
| `settings.py` | 54 | `SettingsPolicy*`, `Settings*`, `SettingsUpdateRequest` |
| `__init__.py` | 7 | Wildcard re-exports — all `from app.api.schemas import X` imports unchanged |
---
## Slice 2: Decompose `app/services/ingestion/application.py` — pagination + publication upsert — DONE
Completed. Extracted three modules from `application.py` (2,955 → 2,084 lines):
| File | Lines | Contents |
|---|---|---|
| `app/services/ingestion/page_fetch.py` | 219 | `PageFetcher` class — single-page fetch, parse-or-layout-error, retry with backoff |
| `app/services/ingestion/pagination.py` | 486 | `PaginationEngine` class — multi-page orchestration, loop state, short-circuit, fingerprint checks |
| `app/services/ingestion/publication_upsert.py` | 239 | Module-level functions — `resolve_publication`, `upsert_profile_publications`, find/create/update helpers |
Also fixed two external import paths (`portability/normalize.py`, `portability/publication_import.py`) that imported `normalize_title`/`build_publication_url` from `application.py` — now correctly sourced from `fingerprints.py`. Updated one integration test to monkeypatch the new module-level function instead of the old instance method.
---
## Slice 3: Decompose `app/services/ingestion/application.py` — enrichment, scholar processing, run completion — DONE
Completed. Extracted four logical chunks from `application.py` (2,085 → 635 lines):
| File | Lines | Contents |
|---|---|---|
| `app/services/ingestion/enrichment.py` | 323 | `EnrichmentRunner` class — OpenAlex enrichment, identifier discovery, dedup sweep |
| `app/services/ingestion/scholar_processing.py` | 614 | `process_scholar`, `run_scholar_iteration`, continuation queue, outcome resolution |
| `app/services/ingestion/run_completion.py` | 417 | `complete_run_for_user`, failure summary, alert summary, safety outcome, progress tracking |
Also updated two tests (`test_ingestion_arxiv_rate_limit.py`, `test_ingestion_progress_reporting.py`) and one integration test (`test_deferred_enrichment.py`) to import from new modules.
**Why:** Three remaining logical chunks. Extracting all three brings `application.py` down to ~500 lines (the orchestration spine).
**Files to create:** `app/services/ingestion/enrichment.py`, `app/services/ingestion/scholar_processing.py`, `app/services/ingestion/run_completion.py`
**Files to modify:** `app/services/ingestion/application.py`
**Prompt:**
You are working on the scholarr repository. Read `agents.md` for project conventions. Continue decomposing `app/services/ingestion/application.py` (slice 2 is complete — `page_fetch.py`, `pagination.py`, and `publication_upsert.py` already extracted). Extract three remaining chunks.
**A. `app/services/ingestion/enrichment.py` (~300 lines)**
Move these methods (post-run OpenAlex enrichment):
- `_run_is_canceled`, `_enrich_pending_publications`, `_discover_identifiers_for_enrichment`
- `_publish_identifier_update_event`, `_enrich_publications_with_openalex`
Create an `EnrichmentRunner` class that receives service dependencies (OpenAlex client, identifier service, dedup service, DB session factory) in its constructor.
**B. `app/services/ingestion/scholar_processing.py` (~400 lines)**
Move these methods (per-scholar outcome resolution):
- `_assert_valid_paged_parse_result`, `_apply_first_page_profile_metadata`, `_build_result_entry`
- `_skipped_no_change_outcome`, `_upsert_publications_outcome`, `_upsert_success_or_exception`
- `_upsert_success`, `_upsert_exception_outcome`, `_parse_failure_outcome`
- `_sync_continuation_queue`, `_process_scholar`, `_process_scholar_inner`
- `_fetch_and_prepare_scholar_result`, `_resolve_scholar_outcome`, `_unexpected_scholar_exception_outcome`
These become methods on a `ScholarProcessor` class or module-level functions.
**C. `app/services/ingestion/run_completion.py` (~300 lines)**
Move these methods (run finalization + alerting):
- `_classify_failure_bucket` (standalone function)
- `_summarize_failures`, `_build_alert_summary`, `_apply_safety_outcome`, `_finalize_run_record`
- `_resolve_run_status`, `_resolve_continuation_queue_target`, `_build_failure_debug_context`
- `_complete_run_for_user`
These become module-level functions accepting explicit parameters.
**After all extractions, `application.py` should contain only:**
- `ScholarIngestionService.__init__` and config helpers
- Run lifecycle: `initialize_run`, `execute_run`, `run_for_user`
- Scholar iteration orchestration: `_run_scholar_iteration`
- Progress tracking: `_result_counters`, `_adjust_progress_counts`
- Safety gate integration, background task management
Target: `application.py` ≤ 500 lines. No new file exceeds 400 lines. All tests must pass unchanged.
Commit message: `refactor: extract enrichment, scholar processing, and run completion from ingestion service`
---
## Slice 4: Decompose `app/services/scholars/application.py` (996 lines) and `app/services/publications/pdf_queue.py` (969 lines) — DONE
Completed. Extracted four modules from two oversized service files:
| File | Lines | Contents |
|---|---|---|
| `app/services/scholars/author_search_cache.py` | 239 | Serialize/deserialize cache entries, cache get/set/prune |
| `app/services/scholars/author_search.py` | 580 | Cooldown, throttle, retry, circuit breaker, `search_author_candidates` |
| `app/services/scholars/application.py` | 221 | Scholar CRUD only (list, create, get, toggle, delete, image ops) |
| `app/services/publications/pdf_queue_queries.py` | 395 | SQL builders, row hydration, listing/counting/pagination, retry item builders |
| `app/services/publications/pdf_queue_resolution.py` | 311 | Task execution, outcome persistence, scheduling (`schedule_rows`) |
| `app/services/publications/pdf_queue.py` | 364 | Dataclasses, constants, enqueueing logic, public API |
Also updated one test file (`test_publication_pdf_queue_policy.py`) to monkeypatch `pdf_queue_resolution` instead of `pdf_queue` for the 4 resolution-related tests, and updated `publications/application.py` and `publication_identifiers/application.py` imports.
**Prompt:**
You are working on the scholarr repository. Read `agents.md` for project conventions. Two service files exceed the 600-line ceiling. Decompose both.
**A. `app/services/scholars/application.py` (996 lines)**
This file mixes scholar CRUD (~350 lines) with the entire author search pipeline (~650 lines). Split them:
Create `app/services/scholars/author_search_cache.py` (~150 lines): Move all `_serialize_*` and `_deserialize_*` functions. Move `_cache_get_author_search_result`, `_cache_set_author_search_result`, `_prune_author_search_cache`. These are pure functions operating on the DB cache table.
Create `app/services/scholars/author_search.py` (~500 lines): Move remaining author search functions — cooldown management, throttle logic, retry wrappers, circuit breaker, lock acquisition, and `search_author_candidates`. Import cache functions from `author_search_cache.py`. Accept DB session and settings as explicit parameters.
Update `application.py`: Keep only scholar CRUD methods. Import and delegate to `search_author_candidates` from `author_search.py`. Target: ≤ 350 lines.
**B. `app/services/publications/pdf_queue.py` (969 lines)**
Three concerns in one file. Split by concern:
Create `app/services/publications/pdf_queue_queries.py` (~330 lines): Move SQL query builders (`_tracked_queue_select_base`, `_tracked_queue_select`, etc.), result hydration (`_queue_item_from_row`, `_hydrated_queue_items`), listing/counting/pagination (`list_pdf_queue_items`, `count_pdf_queue_items`, `list_pdf_queue_page`), retry item builders and missing-PDF candidate queries.
Create `app/services/publications/pdf_queue_resolution.py` (~300 lines): Move task execution (`_mark_attempt_started`, `_failed_outcome`, `_fetch_outcome_for_row`), outcome persistence (`_apply_publication_update`, `_apply_job_outcome`, `_persist_outcome`), scheduling (`_resolve_publication_row`, `_run_resolution_task`, `_register_task`, `_drop_finished_task`, `_schedule_rows`).
Keep in `pdf_queue.py` (~340 lines): dataclasses, constants, enqueueing logic, public API.
No file should exceed 500 lines. All tests must pass unchanged.
Commit message: `refactor: decompose scholars service and pdf_queue into focused modules`
---
## Slice 5: Decompose router files and scheduler — DONE
Completed. Extracted helpers from three oversized files:
| File | Lines | Contents |
|---|---|---|
| `app/api/routers/run_serializers.py` | 238 | `serialize_run`, `serialize_queue_item`, `normalize_scholar_result`, `manual_run_payload_from_run`, `manual_run_success_payload`, value coercion helpers, idempotency key validation |
| `app/api/routers/run_manual.py` | 237 | `load_safety_state`, `raise_manual_runs_disabled`, `reused_manual_run_payload`, `run_ingestion_for_manual`, `recover_integrity_error`, `execute_manual_run`, safety/failure raise helpers |
| `app/api/routers/runs.py` | 440 | Route handlers only + imports |
| `app/api/routers/scholar_helpers.py` | 234 | `serialize_scholar`, `hydrate_scholar_metadata_if_needed`, `enqueue_initial_scrape_job_for_scholar`, `search_kwargs`, `search_response_data`, `require_user_profile`, `read_uploaded_image` |
| `app/api/routers/scholars.py` | 406 | Route handlers only + imports |
| `app/services/ingestion/queue_runner.py` | 379 | `QueueJobRunner` class — drain continuation queue, job lifecycle (drop/retry/reschedule), ingestion dispatch, finalization |
| `app/services/ingestion/scheduler.py` | 312 | `SchedulerService` — auto-run scheduling, `_run_loop`, `_tick_once`, candidate loading, PDF queue drain |
Also updated one test file (`test_scholars_create_hydration.py`) to monkeypatch `scholar_helpers` instead of the `scholars` router for the 4 helper-related tests.
**Files to create:** `app/api/routers/run_serializers.py`, `app/api/routers/run_manual.py`, `app/api/routers/scholar_helpers.py`, `app/services/ingestion/queue_runner.py`
**Files to modify:** `app/api/routers/runs.py` (875 → ~405), `app/api/routers/scholars.py` (616 → ~396), `app/services/ingestion/scheduler.py` (622 → ~280)
**Prompt:**
You are working on the scholarr repository. Read `agents.md` for project conventions. Three files are slightly over the 600-line ceiling. Extract helpers from each.
**A. `app/api/routers/runs.py` (875 lines) → 3 files**
Create `app/api/routers/run_serializers.py` (~250 lines): Move all `_serialize_*`, `_normalize_*`, `_int_value`, `_str_value`, `_bool_value` helper functions. Move `_manual_run_payload_from_run` and `_manual_run_success_payload`.
Create `app/api/routers/run_manual.py` (~220 lines): Move `_load_safety_state`, `_raise_manual_runs_disabled`, `_reused_manual_run_payload`, `_run_ingestion_for_manual`, `_recover_integrity_error`, `_execute_manual_run`, `_raise_manual_blocked_safety`, `_raise_manual_failed`.
Keep in `runs.py` (~405 lines): only route handler functions + imports.
**B. `app/api/routers/scholars.py` (616 lines) → 2 files**
Create `app/api/routers/scholar_helpers.py` (~220 lines): Move `_needs_metadata_hydration`, `_is_create_hydration_rate_limited`, `_auto_enqueue_new_scholar_enabled`, `_enqueue_initial_scrape_job_for_scholar`, `_uploaded_image_media_path`, `_serialize_scholar`, `_hydrate_scholar_metadata_if_needed`, `_search_kwargs`, `_search_response_data`, `_read_uploaded_image`, `_require_user_profile`.
Keep in `scholars.py` (~396 lines): only route handlers.
**C. `app/services/ingestion/scheduler.py` (622 lines) → 2 files**
Create `app/services/ingestion/queue_runner.py` (~350 lines): Move all continuation-queue job processing — `_drain_continuation_queue`, `_drop_queue_job_if_max_attempts`, `_mark_queue_job_retrying`, `_queue_job_has_available_scholar`, all `_reschedule_*` methods, `_run_ingestion_for_queue_job`, `_finalize_queue_job_after_run`, `_run_queue_job`. Create a `QueueJobRunner` class receiving config params in constructor.
Keep in `scheduler.py` (~280 lines): auto-run scheduling, `_run_loop`, `_tick_once`, candidate loading.
All tests must pass unchanged after each extraction.
Commit message: `refactor: extract helpers from oversized router and scheduler files`
---
## Verification (after all slices)
```bash
# No Python file exceeds 600 lines
find app/ -name "*.py" -exec wc -l {} + | awk '$1 > 600 && !/total/ {print "FAIL:", $0}'
# All tests pass
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app python -m pytest
# Linting
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app ruff check .
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app ruff format --check .
```

628
MODERNIZATION_PLAN.md
View file

@ -1,628 +0,0 @@
# Scholarr Modernization Plan — Slices 2-10
> **Slice 1 is complete** (commit `7736cab`): removed 114 stale `build/` files, fixed `.gitignore`, committed pending deletions, replaced `npm install` with `npm ci` in CI.
>
> Each slice below is a self-contained prompt designed for an LLM executor. Execute in order — each slice depends on the prior ones being complete.
---
## Slice 2: Create `structured_log()` Utility
**Why:** The codebase has 19 `_log_*` helper functions (422 lines) and 138 instances of duplicated `"event"` keys in logging calls. A single utility eliminates all of it.
**Files to create:**
- `app/logging_utils.py`
**Files to modify:**
- `tests/unit/test_logging.py`
**Context files (read but don't modify):**
- `app/logging_config.py` — line 88 has `"event": getattr(record, "event", record.getMessage())` which means when no `event` key is in `extra`, it falls back to `getMessage()`. This is the mechanism that makes `structured_log()` work without duplicating the event name.
- `app/logging_context.py`
**Prompt:**
```
You are working on the scholarr repository. The current logging pattern has a DRY problem:
1. Every log call duplicates the event name as both the message and in extra["event"]:
`logger.info("event.name", extra={"event": "event.name", "key": value})`
2. There are 19 `_log_*` helper functions (422 lines total) that just wrap logger calls with typed signatures to build extra dicts.
3. Metrics data (metric_name/metric_value) is mixed into log extra dicts but has no consumer.
Create `app/logging_utils.py`:
```python
"""Structured logging utility — eliminates boilerplate across domain services."""
from __future__ import annotations
import logging
from typing import Any
def structured_log(
logger: logging.Logger,
level: str,
event: str,
/,
**fields: Any,
) -> None:
"""Emit a structured log entry.
The event name is passed as the log message. The JsonLogFormatter in
logging_config.py extracts it via record.getMessage() when no explicit
'event' key exists in extra — so we do NOT duplicate it.
Usage:
structured_log(logger, "info", "ingestion.run_started", user_id=1, scholar_count=5)
"""
fields.pop("metric_name", None)
fields.pop("metric_value", None)
log_method = getattr(logger, level.lower())
log_method(event, extra=fields)
```
Verify that `app/logging_config.py` line 88 already handles this correctly — when no `event` key is in extra, it falls back to getMessage() which returns the event string passed as the first argument. No changes to logging_config.py should be needed.
Add tests in `tests/unit/test_logging.py` (append to existing file):
- Test that `structured_log()` produces a log record where the JsonLogFormatter outputs the event name correctly
- Test that `structured_log()` works with ConsoleLogFormatter
- Test that metric_name/metric_value fields are stripped from output
- Test that extra fields (user_id, scholar_id, etc.) appear in the formatted output
Commit message: "refactor: add structured_log utility to eliminate logging boilerplate"
```
---
## Slice 3: Migrate Ingestion Logging to `structured_log()`
**Why:** `app/services/ingestion/application.py` is 3,089 lines. 8 `_log_*` helpers consume ~239 lines. 34 inline logger calls duplicate event names and include dead metric fields. This slice removes ~300 lines.
**Files to modify:**
- `app/services/ingestion/application.py`
**Context files:**
- `app/logging_utils.py` (created in Slice 2)
**Prompt:**
```
You are working on the scholarr repository. The file `app/services/ingestion/application.py` (3,089 lines) has 8 `_log_*` helper functions consuming ~239 lines, plus 34 inline logger calls with duplicated `"event":` keys and mixed `metric_name`/`metric_value` fields.
Migrate ALL logging in this file to use `structured_log()` from `app.logging_utils`.
1. Add `from app.logging_utils import structured_log` at the top.
2. Delete these 8 helper methods entirely:
- `_log_request_delay_coercion` (line ~123, 21 lines)
- `_log_run_started` (line ~310, 36 lines)
- `_log_scholar_parsed` (line ~383, 28 lines)
- `_log_alert_thresholds` (line ~1013, 47 lines)
- `_log_safety_transition` (line ~1093, 42 lines)
- `_log_run_completed` (line ~1178, 28 lines)
- `_attempt_log_entry` (line ~1837, 16 lines)
- `_page_log_entry` (line ~1999, 21 lines)
3. Replace every call to these deleted helpers with an inline `structured_log()` call. Example:
Before:
```python
self._log_run_started(
user_id=user_id,
trigger_type=trigger_type,
scholar_count=scholar_count,
...
)
```
After:
```python
structured_log(
logger, "info", "ingestion.run_started",
user_id=user_id,
trigger_type=trigger_type.value,
scholar_count=scholar_count,
...
)
```
4. For ALL remaining inline `logger.info/warning/debug/exception()` calls:
- Replace with `structured_log()` where the call uses `extra={"event": ..., ...}` pattern
- Do NOT convert `logger.exception()` calls — keep them but remove the duplicated `"event"` key from their extra dict
- Remove `metric_name` and `metric_value` from all calls
5. Do NOT change any business logic. Only logging call sites.
Expected outcome: ~300 lines removed. All existing tests must pass unchanged.
Commit message: "refactor: migrate ingestion service logging to structured_log"
```
---
## Slice 4: Migrate All Remaining Services to `structured_log()`
**Why:** 11 more `_log_*` helpers remain across 8 files (183 lines total), plus inline logger calls with the same duplication pattern in ~20 files.
**Files to modify (all have `_log_*` helpers to delete):**
- `app/services/ingestion/scheduler.py` — `_log_queue_item_resolved` (line ~518, 21 lines)
- `app/services/arxiv/rate_limit.py` — `_log_request_scheduled` (199), `_log_request_completed` (216), `_log_cooldown_activated` (235)
- `app/services/arxiv/client.py` — `_log_cache_event` (283), `_log_request_skipped_for_cooldown` (299)
- `app/services/publications/pdf_resolution_pipeline.py` — `_log_arxiv_skip` (148)
- `app/services/unpaywall/application.py` — `_log_resolution_summary` (194)
- `app/api/routers/publications.py` — `_log_retry_pdf_result` (343)
- `app/api/routers/settings.py` — `_log_settings_update` (103)
- `app/main.py` — `_log_startup_build_marker` (53)
**Files to modify (inline `extra={"event":...}` pattern only — no helpers to delete):**
- `app/http/middleware.py`
- `app/db/session.py`
- `app/auth/runtime.py`
- `app/security/csrf.py`
- `app/api/routers/scholars.py`
- `app/api/routers/runs.py`
- `app/api/routers/admin_dbops.py`
- `app/api/routers/admin.py`
- `app/api/routers/auth.py`
- `app/api/routers/publications.py`
- `app/services/scholars/application.py`
- `app/services/runs/events.py`
- `app/services/openalex/client.py`
- `app/services/openalex/matching.py`
- `app/services/crossref/application.py`
- `app/services/publications/dedup.py`
- `app/services/publications/enrichment.py`
- `app/services/publications/pdf_queue.py`
- `app/services/scholar/source.py`
- `app/services/arxiv/gateway.py`
**Prompt:**
```
You are working on the scholarr repository. Slice 3 migrated `ingestion/application.py` to `structured_log()`. Now do the same for ALL remaining files.
1. Delete these `_log_*` helper functions and replace their call sites with inline `structured_log()`:
- `app/services/ingestion/scheduler.py:~518` — `_log_queue_item_resolved` (21 lines)
- `app/services/arxiv/rate_limit.py:~199` — `_log_request_scheduled` (17 lines)
- `app/services/arxiv/rate_limit.py:~216` — `_log_request_completed` (19 lines)
- `app/services/arxiv/rate_limit.py:~235` — `_log_cooldown_activated` (13 lines)
- `app/services/arxiv/client.py:~283` — `_log_cache_event` (16 lines)
- `app/services/arxiv/client.py:~299` — `_log_request_skipped_for_cooldown` (13 lines)
- `app/services/publications/pdf_resolution_pipeline.py:~148` — `_log_arxiv_skip` (11 lines)
- `app/services/unpaywall/application.py:~194` — `_log_resolution_summary` (21 lines)
- `app/api/routers/publications.py:~343` — `_log_retry_pdf_result` (24 lines)
- `app/api/routers/settings.py:~103` — `_log_settings_update` (15 lines)
- `app/main.py:~53` — `_log_startup_build_marker` (13 lines)
2. In ALL files under `app/` that have inline `logger.info/warning/debug("event.name", extra={"event": "event.name", ...})` calls:
- Replace with `structured_log(logger, "level", "event.name", key=value, ...)`
- Add `from app.logging_utils import structured_log` import
- Remove `metric_name`/`metric_value` from all calls
- Keep `logger.exception()` calls but remove the duplicated `"event"` key from their extra dicts
3. In `app/services/openalex/client.py`, the lines that log `response.text` (lines ~87, ~137):
- Truncate: `response.text[:500]`
4. Do NOT change any business logic. Only logging call sites.
Verify: `grep -rn '"event":' app/ --include="*.py" | grep -v __pycache__` should return 0 matches.
Verify: `grep -rn 'def _log_' app/ --include="*.py"` should return 0 matches.
Commit message: "refactor: migrate all remaining logging to structured_log, remove boilerplate helpers"
```
---
## Slice 5: Logging Relevance Audit — Reduce Noise, Improve Readability
**Why:** Self-hosted users need clear, actionable logs. Current logging has verbose debug noise (per-HTTP-request, per-publication), overly long event names, and no console display optimization.
**Files to modify:**
- `app/services/scholar/source.py`
- `app/services/ingestion/application.py`
- `app/logging_config.py`
- Any files with event names longer than ~40 chars
**Prompt:**
```
You are working on the scholarr repository. The logging has been migrated to `structured_log()` (slices 2-4). Now audit log RELEVANCE and READABILITY for self-hosted users running this in Docker.
1. **Remove redundant debug logs:**
- `app/services/scholar/source.py`: Remove the 3 debug-level HTTP fetch events (fetch_started, search_fetch_started, publication_fetch_started). Keep only `fetch_succeeded` at DEBUG. The HTTP middleware already logs request.started/completed.
- `app/services/ingestion/application.py`: Remove per-publication `publication.discovered` and `publication.created` DEBUG logs. The run_completed summary already reports totals.
2. **Shorten overly long event names** (search all structured_log calls in app/):
- `ingestion.request_delay_coerced_to_policy_floor` → `ingestion.delay_coerced`
- `ingestion.safety_cooldown_cleared` → `ingestion.cooldown_cleared`
- Any other names longer than ~40 chars — shorten while preserving meaning
3. **Improve console readability** in `app/logging_config.py` `ConsoleLogFormatter.format()`:
- Add a short-name mapping for common context fields in console output ONLY (JSON keeps full names):
```python
_CONSOLE_SHORT_KEYS = {
"user_id": "user",
"scholar_id": "scholar",
"crawl_run_id": "run",
"run_id": "run",
}
```
- Apply in the `for key in sorted(payload.keys())` loop
4. Do NOT remove any WARNING or ERROR level logs. Only remove/demote DEBUG/INFO that are redundant.
5. Do NOT change business logic.
Commit message: "refactor: reduce log noise, improve event naming and console readability"
```
---
## Slice 6: Add Ruff + Mypy to CI
**Why:** No Python linting or type checking in CI. Code quality regressions go undetected.
**Files to modify:**
- `pyproject.toml`
- `.github/workflows/ci.yml`
**Prompt:**
```
You are working on the scholarr repository. Add Python linting and type checking to CI.
1. In `pyproject.toml`, add ruff configuration:
```toml
[tool.ruff]
target-version = "py312"
line-length = 120
[tool.ruff.lint]
select = ["E", "F", "W", "I", "UP", "B", "SIM", "RUF"]
ignore = ["E501"]
[tool.ruff.lint.isort]
known-first-party = ["app"]
```
2. In `pyproject.toml`, add mypy configuration:
```toml
[tool.mypy]
python_version = "3.12"
ignore_missing_imports = true
check_untyped_defs = false
warn_unused_ignores = true
```
3. In `.github/workflows/ci.yml`, add a `lint` job after `repo-hygiene` and before `test`:
```yaml
lint:
runs-on: ubuntu-latest
needs: [repo-hygiene]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.12"
- uses: astral-sh/setup-uv@v4
- run: uv sync --extra dev
- name: Ruff check
run: uv run ruff check .
- name: Ruff format check
run: uv run ruff format --check .
- name: Mypy
run: uv run mypy app/ --ignore-missing-imports
```
4. Update the `test` job's `needs` to include `lint`.
5. Add `ruff` and `mypy` to dev dependencies in `pyproject.toml` under `[project.optional-dependencies]`.
6. Run `ruff check .` locally and fix auto-fixable issues with `ruff check --fix .`. For unfixable issues, add targeted `noqa` comments only if fixing would change behavior.
Commit message: "ci: add ruff linting and mypy type checking"
```
---
## Slice 7: Add CodeQL + Dependabot
**Why:** No security scanning. Missed vulnerabilities, no automated dependency updates.
**Files to create:**
- `.github/workflows/codeql.yml`
- `.github/dependabot.yml`
**Prompt:**
```
You are working on the scholarr repository. Add security scanning.
1. Create `.github/workflows/codeql.yml`:
```yaml
name: CodeQL
on:
push:
branches: [main]
pull_request:
branches: [main]
schedule:
- cron: "30 5 * * 1"
jobs:
analyze:
runs-on: ubuntu-latest
permissions:
security-events: write
contents: read
strategy:
matrix:
language: [python, javascript]
steps:
- uses: actions/checkout@v4
- uses: github/codeql-action/init@v3
with:
languages: ${{ matrix.language }}
- uses: github/codeql-action/autobuild@v3
- uses: github/codeql-action/analyze@v3
```
2. Create `.github/dependabot.yml`:
```yaml
version: 2
updates:
- package-ecosystem: pip
directory: /
schedule:
interval: weekly
- package-ecosystem: npm
directory: /frontend
schedule:
interval: weekly
- package-ecosystem: github-actions
directory: /
schedule:
interval: weekly
```
Commit message: "ci: add CodeQL security scanning and Dependabot"
```
---
## Slice 8: Fix Version Remnants + Adopt Semantic Release
**Why:** Version `0.1.0` is hardcoded in 5 places (including `crossref/application.py:294`). `0.0.1` exists in `docs/website/package.json`. No CHANGELOG, no GitHub Releases.
**Files to modify:**
- `pyproject.toml`
- `app/services/crossref/application.py`
**Files to create:**
- `.github/workflows/release.yml`
**Prompt:**
```
You are working on the scholarr repository. Set up automated versioning with python-semantic-release.
1. Fix hardcoded version in `app/services/crossref/application.py` (line ~294):
```python
# Before:
etiquette = Etiquette(settings.app_name, "0.1.0", "https://scholarr.local", email)
# After:
from importlib.metadata import version as pkg_version
_APP_VERSION = pkg_version("scholarr")
# then in function:
etiquette = Etiquette(settings.app_name, _APP_VERSION, "https://scholarr.local", email)
```
2. In `pyproject.toml`, add semantic-release config:
```toml
[tool.semantic_release]
version_toml = ["pyproject.toml:project.version"]
version_variables = ["frontend/package.json:version"]
branch = "main"
build_command = ""
commit_message = "chore(release): v{version}"
```
3. Create `.github/workflows/release.yml`:
```yaml
name: Release
on:
push:
branches: [main]
jobs:
release:
runs-on: ubuntu-latest
if: github.repository == 'JustinZeus/scholarr'
permissions:
contents: write
id-token: write
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GITHUB_TOKEN }}
- uses: actions/setup-python@v5
with:
python-version: "3.12"
- run: pip install python-semantic-release
- name: Semantic Release
id: release
run: semantic-release publish
env:
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
```
4. Add `python-semantic-release` to dev dependencies in `pyproject.toml`.
Note: `docs/website/package.json` version (`0.0.1`) is addressed in Slice 9 (docs rebuild). `frontend/package-lock.json` and `uv.lock` versions auto-update on next `npm install`/`uv sync`.
Commit message: "ci: adopt python-semantic-release, fix hardcoded version strings"
```
---
## Slice 9: Docs — Delete and Rebuild from Scratch
**Why:** Current docs have split authority (two api-contract.md files), orphaned pages, stale version (`0.0.1`), and missing critical docs (testing, deployment, configuration reference). Clean slate is faster than migration.
**Files to delete:**
- `docs/` (entire directory)
**Files to create:**
- Complete new `docs/` tree
**Prompt:**
```
You are working on the scholarr repository. Delete the entire `docs/` directory and rebuild from scratch.
Target IA:
docs/
├── index.md # Landing page: what is scholarr, quick links
├── user/
│ ├── overview.md # What scholarr does, key concepts
│ ├── getting-started.md # Install (docker compose), first run, add first scholar
│ └── configuration.md # ALL env vars from .env.example, organized by category
├── developer/
│ ├── overview.md # Dev quickstart
│ ├── architecture.md # FastAPI + SQLAlchemy + Vue 3, domain service boundaries
│ ├── local-development.md # docker-compose.dev.yml, hot reload, running tests
│ ├── contributing.md # PR process, conventional commits, code standards from agents.md
│ ├── ingestion.md # Ingestion pipeline: parsing, rate limiting, safety gates
│ ├── frontend-theme-inventory.md # Theme tokens, Tailwind integration
│ └── testing.md # Test tiers (unit/integration/smoke), markers, fixtures, how to run
├── operations/
│ ├── overview.md # Ops quickstart
│ ├── deployment.md # Production Docker, scaling, health checks
│ ├── database-runbook.md # Backup, restore, integrity checks, migration procedures
│ ├── scrape-safety-runbook.md # Rate limiting, cooldowns, CAPTCHA handling
│ └── arxiv-runbook.md # ArXiv rate limits, cache, query patterns
├── reference/
│ ├── overview.md # Reference index
│ ├── api.md # CANONICAL: envelope spec + endpoints + DTO contract
│ ├── environment.md # Env var quick-reference (links to user/configuration.md)
│ └── changelog.md # Placeholder: "auto-generated by semantic-release"
└── website/
├── docusaurus.config.js
├── sidebars.js # ALL pages listed, no orphans
├── package.json # version: "0.1.0"
└── src/css/custom.css
Content guidelines:
- Self-contained, scannable docs (headers, bullets, tables)
- Frontmatter: `title`, `sidebar_position`
- `configuration.md`: read `.env.example`, organize every variable with description, type, default, example
- `testing.md`: pytest markers from pyproject.toml (`integration`, `db`, `migrations`, `schema`, `smoke`), container-based runner from agents.md, fixture org under tests/fixtures/
- `api.md`: merge old `developer/api-contract.md` (DTO structure) and `reference/api-contract.md` (envelope spec). Include exact envelope shapes:
- Success: `{"data": ..., "meta": {"request_id": "..."}}`
- Error: `{"error": {"code": "...", "message": "...", "details": ...}, "meta": {"request_id": "..."}}`
- Publication semantics (modes, pagination, identifiers)
- Scholar portability endpoints
- `deployment.md`: practical Docker commands from docker-compose.yml
- `database-runbook.md`: reference scripts/db/ (backup_full.sh, restore_dump.sh, check_integrity.py, repair_publication_links.py)
Docusaurus config:
- url: "https://justinzeus.github.io"
- baseUrl: "/scholarr/"
- organizationName: "JustinZeus"
- projectName: "scholarr"
- onBrokenLinks: "throw"
- docs path: ".." (reads from docs/ parent)
- Exclude: "website/**", "README.md"
Commit message: "docs: rebuild documentation from scratch with clean IA"
```
---
## Slice 10: Begin `ingestion/application.py` Decomposition
**Why:** After logging cleanup (slices 3+5), the file is ~2,700-2,800 lines. Still the largest source file by 3x. This begins decomposition with the safest extract: safety gate logic.
**Files to modify:**
- `app/services/ingestion/application.py`
**Files to create:**
- `app/services/ingestion/safety.py`
**Prompt:**
```
You are working on the scholarr repository. `app/services/ingestion/application.py` is ~2,700-2,800 lines (after logging cleanup). It contains the entire ingestion orchestration in a single class.
Extract the FIRST logical chunk: safety gate logic.
1. Read `app/services/ingestion/application.py` fully.
2. Identify safety/cooldown methods:
- `_enforce_safety_gate`
- `_raise_safety_blocked_start`
- Cooldown activation/clearing methods
- Alert threshold evaluation methods
3. Create `app/services/ingestion/safety.py`:
- Move identified methods to standalone functions or a small class
- Accept explicit parameters (no implicit self.xxx state)
- Keep same function signatures where possible
4. Update `application.py` to import from `safety.py`.
5. Run full test suite: `docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app pytest tests/`
All tests must pass unchanged.
Constraints from `agents.md`:
- Max 50 lines per function
- No flat files in `app/services/` root — all within `app/services/ingestion/`
- Fail fast, early returns, guard clauses
Commit message: "refactor: extract ingestion safety gate logic to dedicated module"
```
---
## Verification (after all slices)
Run these checks to confirm everything is clean:
```bash
# 1. No tracked build artifacts
git ls-files build/ | wc -l # expect: 0
# 2. No duplicated event keys in logging
grep -rn '"event":' app/ --include="*.py" | grep -v __pycache__ | wc -l # expect: 0
# 3. No _log_ helper functions remain
grep -rn 'def _log_' app/ --include="*.py" | wc -l # expect: 0
# 4. No stale version strings
grep -rn '0\.0\.1' . --include="*.py" --include="*.json" --include="*.toml" \
| grep -v node_modules | grep -v .venv | grep -v uv.lock | wc -l # expect: 0
# 5. Docs build
npm --prefix docs/website run build # expect: success, no broken links
# 6. All tests pass
docker compose -f docker-compose.yml -f docker-compose.dev.yml run --rm app pytest tests/
```
---
## Slice Summary
| # | Slice | Files Changed | Estimated Impact |
|---|-------|---------------|------------------|
| ~~1~~ | ~~Repo hygiene~~ | ~~120 files~~ | ~~-18,380 lines~~ **DONE** |
| 2 | `structured_log()` utility | 2 files | +50 lines |
| 3 | Migrate ingestion logging | 1 file | -300 lines |
| 4 | Migrate remaining logging | ~20 files | -180 lines |
| 5 | Logging noise/readability | ~5 files | -30 lines, better output |
| 6 | Ruff + mypy in CI | 2 files | +50 lines config |
| 7 | CodeQL + Dependabot | 2 files | +40 lines config |
| 8 | Version fix + semantic-release | 3 files | +40 lines config |
| 9 | Docs rebuild | full replacement | ~20 new files |
| 10 | Ingestion decomposition | 2 files | net zero (move) |

2
agents.md
View file

@ -77,7 +77,7 @@ Types: `feat`, `fix`, `docs`, `ci`, `refactor`, `test`, `chore`, `perf`.
## 7. Testing & Quality Gates
All commands run inside containers. Do not run bare `npm`, `pytest`, or `ruff` on the host.
All **local development** commands run inside containers. Do not run bare `npm`, `pytest`, or `ruff` on the host. CI workflows (`.github/workflows/`) use bare runners with `uv` and `npm` directly — this is intentional since CI has no Docker-in-Docker dependency.
### Backend

18
app/api/routers/run_manual.py
View file

@ -138,9 +138,11 @@ async def recover_integrity_error(
original_exc: IntegrityError,
) -> dict[str, Any]:
if idempotency_key is None:
logger.exception(
structured_log(
logger,
"exception",
"api.runs.manual_integrity_error",
extra={"user_id": user_id},
user_id=user_id,
)
raise ApiException(status_code=500, code="manual_run_failed", message="Manual run failed.") from original_exc
existing_run = await run_service.get_manual_run_by_idempotency_key(
@ -149,9 +151,11 @@ async def recover_integrity_error(
idempotency_key=idempotency_key,
)
if existing_run is None:
logger.exception(
structured_log(
logger,
"exception",
"api.runs.manual_integrity_error",
extra={"user_id": user_id},
user_id=user_id,
)
raise ApiException(status_code=500, code="manual_run_failed", message="Manual run failed.") from original_exc
if existing_run.status in (RunStatus.RUNNING, RunStatus.RESOLVING):
@ -230,8 +234,10 @@ def raise_manual_blocked_safety(*, exc, user_id: int) -> None:
def raise_manual_failed(*, exc: Exception, user_id: int) -> None:
logger.exception(
structured_log(
logger,
"exception",
"api.runs.manual_failed",
extra={"user_id": user_id},
user_id=user_id,
)
raise ApiException(status_code=500, code="manual_run_failed", message="Manual run failed.") from exc

41
app/api/routers/runs.py
View file

@ -37,7 +37,8 @@ from app.api.schemas import (
RunsListEnvelope,
)
from app.db.models import RunStatus, RunTriggerType, User
from app.db.session import get_db_session
from app.db.session import get_db_session, get_session_factory
from app.logging_utils import structured_log
from app.services.ingestion import application as ingestion_service
from app.services.runs import application as run_service
from app.services.runs.events import event_generator
@ -47,6 +48,14 @@ from app.settings import settings
logger = logging.getLogger(__name__)
_background_tasks: set[asyncio.Task[Any]] = set()
def _drop_finished_task(task: asyncio.Task[Any]) -> None:
_background_tasks.discard(task)
try:
task.result()
except Exception:
structured_log(logger, "exception", "runs.background_task_failed")
router = APIRouter(prefix="/runs", tags=["api-runs"])
ACTIVE_RUN_STATUSES = {RunStatus.RUNNING, RunStatus.RESOLVING}
@ -234,7 +243,7 @@ def _spawn_background_execution(
)
)
_background_tasks.add(task)
task.add_done_callback(_background_tasks.discard)
task.add_done_callback(_drop_finished_task)
@router.post(
@ -247,15 +256,16 @@ async def run_manual(
current_user: User = Depends(get_api_current_user),
ingest_service: ingestion_service.ScholarIngestionService = Depends(get_ingestion_service),
):
safety_state = await load_safety_state(db_session, user_id=current_user.id)
user_id = int(current_user.id)
safety_state = await load_safety_state(db_session, user_id=user_id)
if not settings.ingestion_manual_run_allowed:
raise_manual_runs_disabled(user_id=current_user.id, safety_state=safety_state)
raise_manual_runs_disabled(user_id=user_id, safety_state=safety_state)
idempotency_key = normalize_idempotency_key(request.headers.get(IDEMPOTENCY_HEADER))
reused_payload = await reused_manual_run_payload(
db_session,
request=request,
user_id=current_user.id,
user_id=user_id,
idempotency_key=idempotency_key,
safety_state=safety_state,
)
@ -291,12 +301,12 @@ async def run_manual(
"new_publication_count": 0,
"reused_existing_run": False,
"idempotency_key": idempotency_key,
"safety_state": await load_safety_state(db_session, user_id=current_user.id),
"safety_state": await load_safety_state(db_session, user_id=user_id),
},
)
except ingestion_service.RunBlockedBySafetyPolicyError as exc:
await db_session.rollback()
raise_manual_blocked_safety(exc=exc, user_id=current_user.id)
raise_manual_blocked_safety(exc=exc, user_id=user_id)
except ingestion_service.RunAlreadyInProgressError as exc:
await db_session.rollback()
raise ApiException(
@ -309,13 +319,13 @@ async def run_manual(
return await recover_integrity_error(
db_session,
request=request,
user_id=current_user.id,
user_id=user_id,
idempotency_key=idempotency_key,
original_exc=exc,
)
except Exception as exc:
await db_session.rollback()
raise_manual_failed(exc=exc, user_id=current_user.id)
raise_manual_failed(exc=exc, user_id=user_id)
@router.get(
@ -454,14 +464,15 @@ async def clear_queue_item(
@router.get("/{run_id}/stream")
async def stream_run_events(
run_id: int,
db_session: AsyncSession = Depends(get_db_session),
current_user: User = Depends(get_api_current_user),
):
run = await run_service.get_run_for_user(
db_session,
user_id=current_user.id,
run_id=run_id,
)
session_factory = get_session_factory()
async with session_factory() as db_session:
run = await run_service.get_run_for_user(
db_session,
user_id=current_user.id,
run_id=run_id,
)
if run is None:
raise ApiException(
status_code=404,

6
app/api/schemas/admin.py
View file

@ -34,8 +34,8 @@ class AdminUsersListEnvelope(BaseModel):
class AdminUserCreateRequest(BaseModel):
email: str
password: str
email: str = Field(max_length=254)
password: str = Field(max_length=128)
is_admin: bool = False
model_config = ConfigDict(extra="forbid")
@ -55,7 +55,7 @@ class AdminUserEnvelope(BaseModel):
class AdminResetPasswordRequest(BaseModel):
new_password: str
new_password: str = Field(max_length=128)
model_config = ConfigDict(extra="forbid")

12
app/api/schemas/auth.py
View file

@ -1,6 +1,6 @@
from __future__ import annotations
from pydantic import BaseModel, ConfigDict
from pydantic import BaseModel, ConfigDict, Field
from app.api.schemas.common import ApiMeta
@ -44,8 +44,8 @@ class CsrfBootstrapEnvelope(BaseModel):
class LoginRequest(BaseModel):
email: str
password: str
email: str = Field(max_length=254)
password: str = Field(max_length=128)
model_config = ConfigDict(extra="forbid")
@ -66,8 +66,8 @@ class LoginEnvelope(BaseModel):
class ChangePasswordRequest(BaseModel):
current_password: str
new_password: str
confirm_password: str
current_password: str = Field(max_length=128)
new_password: str = Field(max_length=128)
confirm_password: str = Field(max_length=128)
model_config = ConfigDict(extra="forbid")

2
app/db/session.py
View file

@ -85,7 +85,7 @@ async def check_database() -> bool:
result = await conn.execute(text("SELECT 1"))
return result.scalar_one() == 1
except Exception:
logger.exception("db.healthcheck_failed")
structured_log(logger, "exception", "db.healthcheck_failed")
return False

12
app/http/middleware.py
View file

@ -74,13 +74,13 @@ class RequestLoggingMiddleware(BaseHTTPMiddleware):
response = await call_next(request)
except Exception:
duration_ms = int((time.perf_counter() - start) * 1000)
logger.exception(
structured_log(
logger,
"exception",
"request.failed",
extra={
"method": request.method,
"path": request.url.path,
"duration_ms": duration_ms,
},
method=request.method,
path=request.url.path,
duration_ms=duration_ms,
)
raise
else:

9
app/main.py
View file

@ -73,8 +73,13 @@ async def lifespan(_: FastAPI):
)
await session.commit()
structured_log(logger, "info", "app.startup_orphaned_runs_cleaned")
except Exception as e:
logger.error(f"Failed to clean orphaned runs at startup: {e}")
except Exception as exc:
structured_log(
logger,
"error",
"app.startup_orphaned_runs_cleanup_failed",
error=str(exc),
)
await scheduler_service.start()
yield

26
app/security/csrf.py
View file

@ -6,9 +6,10 @@ from urllib.parse import parse_qs
from starlette.middleware.base import BaseHTTPMiddleware
from starlette.requests import Request
from starlette.responses import JSONResponse, PlainTextResponse, Response
from starlette.responses import PlainTextResponse, Response
from starlette.types import Message
from app.api.responses import error_response
from app.logging_utils import structured_log
CSRF_SESSION_KEY = "csrf_token"
@ -88,7 +89,10 @@ class CSRFMiddleware(BaseHTTPMiddleware):
content_type = request.headers.get("content-type", "")
if not content_type.startswith("application/x-www-form-urlencoded"):
return None
parsed = parse_qs(body.decode("utf-8"), keep_blank_values=True)
try:
parsed = parse_qs(body.decode("utf-8"), keep_blank_values=True)
except (UnicodeDecodeError, ValueError):
return None
values = parsed.get(CSRF_FORM_FIELD)
if not values:
return None
@ -114,19 +118,11 @@ class CSRFMiddleware(BaseHTTPMiddleware):
message: str,
) -> Response:
if request.url.path.startswith("/api/"):
request_state = getattr(request, "state", None)
request_id = getattr(request_state, "request_id", None) if request_state else None
return JSONResponse(
{
"error": {
"code": code,
"message": message,
"details": None,
},
"meta": {
"request_id": request_id,
},
},
return error_response(
request,
status_code=403,
code=code,
message=message,
details=None,
)
return PlainTextResponse(message, status_code=403)

35
app/services/arxiv/rate_limit.py
View file

@ -75,24 +75,31 @@ async def _run_serialized_fetch(
runtime_state,
source_path=source_path,
)
response = await fetch()
runtime_state.next_allowed_at = datetime.now(UTC) + timedelta(seconds=_min_interval_seconds())
if wait_seconds > 0:
await asyncio.sleep(wait_seconds)
response = await fetch()
async with session_factory() as db_session, db_session.begin():
runtime_state = await _load_runtime_state_for_update(db_session)
hit_rate_limit = _record_post_response_state(
runtime_state,
response_status=int(response.status_code),
source_path=source_path,
)
structured_log(
logger,
"info",
"arxiv.request_completed",
status_code=int(response.status_code),
wait_seconds=wait_seconds,
cooldown_remaining_seconds=_cooldown_remaining_seconds(
runtime_state.cooldown_until, now_utc=datetime.now(UTC)
),
source_path=source_path,
)
return response, hit_rate_limit
structured_log(
logger,
"info",
"arxiv.request_completed",
status_code=int(response.status_code),
wait_seconds=wait_seconds,
cooldown_remaining_seconds=_cooldown_remaining_seconds(
runtime_state.cooldown_until, now_utc=datetime.now(UTC)
),
source_path=source_path,
)
return response, hit_rate_limit
async def _acquire_arxiv_lock(db_session: AsyncSession) -> None:
@ -144,8 +151,6 @@ async def _wait_for_allowed_slot_or_raise(
source_path=source_path,
cooldown_remaining_seconds=0.0,
)
if wait_seconds > 0:
await asyncio.sleep(wait_seconds)
return wait_seconds

3
app/services/crossref/application.py
View file

@ -350,7 +350,8 @@ async def _fetch_items(
),
timeout=timeout,
)
except Exception:
except Exception as exc:
structured_log(logger, "warning", "crossref.fetch_failed", error=str(exc))
return []

10
app/services/dbops/near_duplicate_repair.py
View file

@ -6,12 +6,14 @@ from typing import Any
from sqlalchemy.ext.asyncio import AsyncSession
from app.db.models import DataRepairJob
from app.services.dbops.application import (
REPAIR_STATUS_COMPLETED,
REPAIR_STATUS_FAILED,
REPAIR_STATUS_PLANNED,
REPAIR_STATUS_RUNNING,
)
from app.services.publications import dedup as dedup_service
REPAIR_STATUS_PLANNED = "planned"
REPAIR_STATUS_RUNNING = "running"
REPAIR_STATUS_COMPLETED = "completed"
REPAIR_STATUS_FAILED = "failed"
NEAR_DUP_JOB_NAME = "repair_publication_near_duplicates"
NEAR_DUP_DEFAULT_MAX_CLUSTERS = 25

277
app/services/ingestion/application.py
View file

@ -1,6 +1,5 @@
from __future__ import annotations
import asyncio
import logging
from datetime import UTC, datetime
from typing import Any
@ -17,21 +16,28 @@ from app.db.models import (
)
from app.logging_utils import structured_log
from app.services.ingestion import queue as queue_service
from app.services.ingestion import safety as run_safety_service
from app.services.ingestion.constants import RUN_LOCK_NAMESPACE
from app.services.ingestion.enrichment import EnrichmentRunner
from app.services.ingestion.pagination import PaginationEngine
from app.services.ingestion.preflight import check_scholar_reachable
from app.services.ingestion.run_completion import (
complete_run_for_user,
int_or_default,
log_run_completed,
run_execution_summary,
)
from app.services.ingestion.run_enrichment import (
inline_enrich_and_finalize,
spawn_background_enrichment_task,
)
from app.services.ingestion.run_guards import (
load_user_settings_for_run,
run_preflight_guard,
)
from app.services.ingestion.scholar_processing import run_scholar_iteration
from app.services.ingestion.types import (
RunAlertSummary,
RunAlreadyInProgressError,
RunBlockedBySafetyPolicyError,
RunBlockedBySafetyPolicyError, # noqa: F401 (re-exported)
RunFailureSummary,
RunProgress,
)
@ -42,8 +48,6 @@ from app.settings import settings
logger = logging.getLogger(__name__)
ACTIVE_RUN_INDEX_NAME = "uq_crawl_runs_user_active"
_background_tasks: set[asyncio.Task[Any]] = set()
def _is_active_run_integrity_error(exc: IntegrityError) -> bool:
original_error = getattr(exc, "orig", None)
@ -97,34 +101,6 @@ def _threshold_kwargs(
}
def _log_run_completed(
*,
run: CrawlRun,
user_id: int,
scholars: list[ScholarProfile],
progress: RunProgress,
failure_summary: RunFailureSummary,
alert_summary: RunAlertSummary,
) -> None:
structured_log(
logger,
"info",
"ingestion.run_completed",
user_id=user_id,
crawl_run_id=run.id,
status=run.status.value,
scholar_count=len(scholars),
succeeded_count=progress.succeeded_count,
failed_count=progress.failed_count,
partial_count=progress.partial_count,
new_publication_count=run.new_pub_count,
blocked_failure_count=alert_summary.blocked_failure_count,
network_failure_count=alert_summary.network_failure_count,
retries_scheduled_count=failure_summary.retries_scheduled_count,
alert_flags=alert_summary.alert_flags,
)
class ScholarIngestionService:
def __init__(self, *, source: ScholarSource) -> None:
self._source = source
@ -138,78 +114,6 @@ class ScholarIngestionService:
)
return max(policy_minimum, int_or_default(value, policy_minimum))
async def _load_user_settings_for_run(
self,
db_session: AsyncSession,
*,
user_id: int,
trigger_type: RunTriggerType,
):
user_settings = await user_settings_service.get_or_create_settings(db_session, user_id=user_id)
await self._enforce_safety_gate(
db_session, user_settings=user_settings, user_id=user_id, trigger_type=trigger_type
)
return user_settings
async def _enforce_safety_gate(
self,
db_session: AsyncSession,
*,
user_settings,
user_id: int,
trigger_type: RunTriggerType,
) -> None:
now_utc = datetime.now(UTC)
previous = run_safety_service.get_safety_event_context(user_settings, now_utc=now_utc)
if run_safety_service.clear_expired_cooldown(user_settings, now_utc=now_utc):
await db_session.commit()
await db_session.refresh(user_settings)
structured_log(
logger,
"info",
"ingestion.cooldown_cleared",
user_id=user_id,
reason=previous.get("cooldown_reason"),
cooldown_until=previous.get("cooldown_until"),
)
now_utc = datetime.now(UTC)
if run_safety_service.is_cooldown_active(user_settings, now_utc=now_utc):
await self._raise_safety_blocked_start(
db_session,
user_settings=user_settings,
user_id=user_id,
trigger_type=trigger_type,
now_utc=now_utc,
)
async def _raise_safety_blocked_start(
self,
db_session: AsyncSession,
*,
user_settings,
user_id: int,
trigger_type: RunTriggerType,
now_utc: datetime,
) -> None:
safety_state = run_safety_service.register_cooldown_blocked_start(user_settings, now_utc=now_utc)
await db_session.commit()
structured_log(
logger,
"warning",
"ingestion.safety_policy_blocked_run_start",
user_id=user_id,
trigger_type=trigger_type.value,
reason=safety_state.get("cooldown_reason"),
cooldown_until=safety_state.get("cooldown_until"),
cooldown_remaining_seconds=safety_state.get("cooldown_remaining_seconds"),
blocked_start_count=((safety_state.get("counters") or {}).get("blocked_start_count")),
)
raise RunBlockedBySafetyPolicyError(
code="scrape_cooldown_active",
message="Scrape safety cooldown is active; run start is temporarily blocked.",
safety_state=safety_state,
)
async def _load_target_scholars(
self,
db_session: AsyncSession,
@ -232,49 +136,6 @@ class ScholarIngestionService:
await queue_service.clear_job_for_scholar(db_session, user_id=user_id, scholar_profile_id=sid)
return scholars
async def _run_preflight_guard(
self,
db_session: AsyncSession,
*,
user_settings: Any,
user_id: int,
scholars: list[ScholarProfile],
) -> None:
if not scholars:
return
result = await check_scholar_reachable(
self._source,
scholar_id=scholars[0].scholar_id,
)
if result.passed:
return
now_utc = datetime.now(UTC)
safety_state, _ = run_safety_service.apply_run_safety_outcome(
user_settings,
run_id=0,
blocked_failure_count=1,
network_failure_count=0,
blocked_failure_threshold=1,
network_failure_threshold=1,
blocked_cooldown_seconds=settings.ingestion_safety_cooldown_blocked_seconds,
network_cooldown_seconds=settings.ingestion_safety_cooldown_network_seconds,
now_utc=now_utc,
)
await db_session.commit()
structured_log(
logger,
"warning",
"ingestion.cooldown_entered_preflight",
user_id=user_id,
block_reason=result.block_reason,
cooldown_until=safety_state.get("cooldown_until"),
)
raise RunBlockedBySafetyPolicyError(
code="scrape_cooldown_active",
message=f"Preflight detected Scholar block ({result.block_reason}). Cooldown activated.",
safety_state=safety_state,
)
async def _initialize_run_for_user(
self,
db_session: AsyncSession,
@ -287,7 +148,7 @@ class ScholarIngestionService:
threshold_kwargs: dict[str, Any],
idempotency_key: str | None,
) -> tuple[Any, CrawlRun, list[ScholarProfile], dict[int, int]]:
user_settings = await self._load_user_settings_for_run(
user_settings = await load_user_settings_for_run(
db_session,
user_id=user_id,
trigger_type=trigger_type,
@ -301,8 +162,9 @@ class ScholarIngestionService:
user_id=user_id,
filtered_scholar_ids=filtered_scholar_ids,
)
await self._run_preflight_guard(
await run_preflight_guard(
db_session,
self._source,
user_settings=user_settings,
user_id=user_id,
scholars=scholars,
@ -486,7 +348,7 @@ class ScholarIngestionService:
if intended_final_status not in (RunStatus.CANCELED,):
run.status = RunStatus.RESOLVING
await db_session.commit()
_log_run_completed(
log_run_completed(
run=run,
user_id=user_id,
scholars=attached_scholars,
@ -495,19 +357,22 @@ class ScholarIngestionService:
alert_summary=alert_summary,
)
if intended_final_status not in (RunStatus.CANCELED,):
task = asyncio.create_task(
self._background_enrich(
session_factory,
run_id=run.id,
intended_final_status=intended_final_status,
openalex_api_key=getattr(user_settings, "openalex_api_key", None),
)
spawn_background_enrichment_task(
session_factory,
self._enrichment,
run_id=run.id,
intended_final_status=intended_final_status,
openalex_api_key=getattr(user_settings, "openalex_api_key", None),
)
_background_tasks.add(task)
task.add_done_callback(_background_tasks.discard)
except Exception as exc:
await db_session.rollback()
logger.exception("ingestion.background_run_failed", extra={"run_id": run_id, "user_id": user_id})
structured_log(
logger,
"exception",
"ingestion.background_run_failed",
run_id=run_id,
user_id=user_id,
)
await self._fail_run_in_background(session_factory, run_id, exc)
async def _prepare_execute_run(
@ -530,47 +395,21 @@ class ScholarIngestionService:
return run, user_settings, list(scholars_result.scalars().all())
async def _fail_run_in_background(self, session_factory: Any, run_id: int, exc: Exception) -> None:
async with session_factory() as cleanup_session:
run_to_fail = await cleanup_session.get(CrawlRun, run_id)
if run_to_fail:
run_to_fail.status = RunStatus.FAILED
run_to_fail.end_dt = datetime.now(UTC)
run_to_fail.error_log["terminal_exception"] = str(exc)
await cleanup_session.commit()
async def _background_enrich(
self,
session_factory: Any,
*,
run_id: int,
intended_final_status: RunStatus,
openalex_api_key: str | None = None,
) -> None:
try:
async with session_factory() as session:
await self._enrichment.enrich_pending_publications(
session,
run_id=run_id,
openalex_api_key=openalex_api_key,
)
run = await session.get(CrawlRun, run_id)
if run is not None and run.status == RunStatus.RESOLVING:
run.status = intended_final_status
await session.commit()
logger.info(
"ingestion.background_enrichment_complete",
extra={"run_id": run_id, "final_status": str(intended_final_status)},
)
async with session_factory() as cleanup_session:
run_to_fail = await cleanup_session.get(CrawlRun, run_id)
if run_to_fail:
run_to_fail.status = RunStatus.FAILED
run_to_fail.end_dt = datetime.now(UTC)
run_to_fail.error_log["terminal_exception"] = str(exc)
await cleanup_session.commit()
except Exception:
logger.exception("ingestion.background_enrichment_failed", extra={"run_id": run_id})
try:
async with session_factory() as fallback_session:
run = await fallback_session.get(CrawlRun, run_id)
if run is not None and run.status == RunStatus.RESOLVING:
run.status = intended_final_status
await fallback_session.commit()
except Exception:
logger.exception("ingestion.background_enrichment_fallback_failed", extra={"run_id": run_id})
structured_log(
logger,
"exception",
"ingestion.fail_run_cleanup_failed",
run_id=run_id,
)
async def run_for_user(
self,
@ -626,7 +465,7 @@ class ScholarIngestionService:
alert_network_failure_threshold=alert_network_failure_threshold,
alert_retry_scheduled_threshold=alert_retry_scheduled_threshold,
)
progress, failure_summary, alert_summary = await self._run_iteration_and_complete(
progress, failure_summary, alert_summary, intended_final_status = await self._run_iteration_and_complete(
db_session,
run=run,
scholars=scholars,
@ -639,10 +478,14 @@ class ScholarIngestionService:
idempotency_key=idempotency_key,
)
user_settings = await user_settings_service.get_or_create_settings(db_session, user_id=user_id)
await self._inline_enrich_and_finalize(
db_session, run=run, user_settings=user_settings, intended_final_status=run.status
await inline_enrich_and_finalize(
db_session,
self._enrichment,
run=run,
user_settings=user_settings,
intended_final_status=intended_final_status,
)
_log_run_completed(
log_run_completed(
run=run,
user_id=user_id,
scholars=scholars,
@ -665,7 +508,7 @@ class ScholarIngestionService:
auto_queue_continuations: bool,
queue_delay_seconds: int,
idempotency_key: str | None,
) -> tuple[RunProgress, RunFailureSummary, RunAlertSummary]:
) -> tuple[RunProgress, RunFailureSummary, RunAlertSummary, RunStatus]:
progress = await run_scholar_iteration(
db_session,
pagination=self._pagination,
@ -691,27 +534,7 @@ class ScholarIngestionService:
if intended_final_status not in (RunStatus.CANCELED,):
run.status = RunStatus.RESOLVING
await db_session.commit()
return progress, failure_summary, alert_summary
async def _inline_enrich_and_finalize(
self,
db_session: AsyncSession,
*,
run: CrawlRun,
user_settings: Any,
intended_final_status: RunStatus,
) -> None:
try:
await self._enrichment.enrich_pending_publications(
db_session,
run_id=run.id,
openalex_api_key=getattr(user_settings, "openalex_api_key", None),
)
except Exception:
logger.exception("ingestion.enrichment_failed", extra={"run_id": run.id})
if run.status == RunStatus.RESOLVING:
run.status = intended_final_status
await db_session.commit()
return progress, failure_summary, alert_summary, intended_final_status
async def _try_acquire_user_lock(
self,

26
app/services/ingestion/enrichment.py
View file

@ -96,7 +96,7 @@ class EnrichmentRunner:
for p in batch:
if await self.run_is_canceled(db_session, run_id=run_id):
logger.info("ingestion.enrichment_aborted", extra={"run_id": run_id})
structured_log(logger, "info", "ingestion.enrichment_aborted", run_id=run_id)
return False, arxiv_lookup_allowed
p.openalex_last_attempt_at = now
arxiv_lookup_allowed = await self._discover_identifiers_for_enrichment(
@ -112,9 +112,9 @@ class EnrichmentRunner:
candidates=openalex_works,
)
if match:
p.year = match.publication_year or p.year
p.citation_count = match.cited_by_count or p.citation_count
p.pdf_url = match.oa_url or p.pdf_url
p.year = match.publication_year if match.publication_year is not None else p.year
p.citation_count = match.cited_by_count if match.cited_by_count is not None else p.citation_count
p.pdf_url = match.oa_url if match.oa_url is not None else p.pdf_url
p.openalex_enriched = True
return True, arxiv_lookup_allowed
@ -162,7 +162,7 @@ class EnrichmentRunner:
for i in range(0, len(publications), batch_size):
if await self.run_is_canceled(db_session, run_id=run_id):
logger.info("ingestion.enrichment_aborted", extra={"run_id": run_id})
structured_log(logger, "info", "ingestion.enrichment_aborted", run_id=run_id)
return
batch = publications[i : i + batch_size]
titles = _sanitize_titles(batch)
@ -181,6 +181,8 @@ class EnrichmentRunner:
continue
except Exception as e:
structured_log(logger, "warning", "ingestion.openalex_enrichment_failed", error=str(e), run_id=run_id)
for p in batch:
p.openalex_last_attempt_at = now
continue
should_continue, arxiv_lookup_allowed = await self._enrich_batch(
db_session,
@ -302,9 +304,13 @@ class EnrichmentRunner:
{"title.search": "|".join(titles)}, limit=batch_size * 3
)
except Exception as e:
logger.warning(
structured_log(
logger,
"warning",
"ingestion.openalex_enrichment_failed",
extra={"error": str(e), "batch_size": len(batch), "scholar_id": scholar.id},
error=str(e),
batch_size=len(batch),
scholar_id=scholar.id,
)
openalex_works = []
@ -320,11 +326,11 @@ class EnrichmentRunner:
title=p.title,
title_url=p.title_url,
cluster_id=p.cluster_id,
year=match.publication_year or p.year,
citation_count=match.cited_by_count,
year=match.publication_year if match.publication_year is not None else p.year,
citation_count=match.cited_by_count if match.cited_by_count is not None else p.citation_count,
authors_text=p.authors_text,
venue_text=p.venue_text,
pdf_url=match.oa_url or p.pdf_url,
pdf_url=match.oa_url if match.oa_url is not None else p.pdf_url,
)
enriched.append(new_p)
else:

12
app/services/ingestion/page_fetch.py
View file

@ -49,13 +49,13 @@ class PageFetcher:
error="source_does_not_support_pagination",
)
except Exception as exc:
logger.exception(
structured_log(
logger,
"exception",
"ingestion.fetch_unexpected_error",
extra={
"scholar_id": scholar_id,
"cstart": cstart,
"page_size": page_size,
},
scholar_id=scholar_id,
cstart=cstart,
page_size=page_size,
)
return FetchResult(
requested_url=(

6
app/services/ingestion/pagination.py
View file

@ -353,6 +353,9 @@ class PaginationEngine:
page_attempt_log=next_attempt_log,
)
if self._handle_page_state_transition(state=state):
return
if next_parsed_page.publications:
await self._upsert_page_publications(
db_session,
@ -364,9 +367,6 @@ class PaginationEngine:
upsert_publications_fn=upsert_publications_fn,
)
if self._handle_page_state_transition(state=state):
return
@staticmethod
def _result_from_pagination_state(
*,

7
app/services/ingestion/publication_upsert.py
View file

@ -8,7 +8,6 @@ from sqlalchemy import select
from sqlalchemy.ext.asyncio import AsyncSession
from app.db.models import CrawlRun, Publication, ScholarProfile, ScholarPublication
from app.services.doi.normalize import first_doi_from_texts
from app.services.ingestion.fingerprints import (
build_publication_fingerprint,
build_publication_url,
@ -106,8 +105,9 @@ def update_existing_publication(
) -> None:
if candidate.cluster_id and publication.cluster_id is None:
publication.cluster_id = candidate.cluster_id
publication.title_raw = candidate.title
publication.title_normalized = normalize_title(candidate.title)
if not publication.title_raw:
publication.title_raw = candidate.title
publication.title_normalized = normalize_title(candidate.title)
if candidate.year is not None:
publication.year = candidate.year
if candidate.citation_count is not None:
@ -118,7 +118,6 @@ def update_existing_publication(
publication.venue_text = candidate.venue_text
if candidate.title_url:
publication.pub_url = build_publication_url(candidate.title_url)
first_doi_from_texts(candidate.title_url, candidate.venue_text, candidate.title)
async def resolve_publication(

8
app/services/ingestion/queue_runner.py
View file

@ -229,7 +229,13 @@ class QueueJobRunner:
error=str(exc),
)
await recovery_session.commit()
logger.exception("scheduler.queue_item_run_failed", extra={"queue_item_id": job.id, "user_id": job.user_id})
structured_log(
logger,
"exception",
"scheduler.queue_item_run_failed",
queue_item_id=job.id,
user_id=job.user_id,
)
async def _load_request_delay_for_user(self, user_id: int, *, floor: int) -> int:
session_factory = get_session_factory()

28
app/services/ingestion/run_completion.py
View file

@ -427,3 +427,31 @@ def run_execution_summary(
partial_count=progress.partial_count,
new_publication_count=run.new_pub_count,
)
def log_run_completed(
*,
run: CrawlRun,
user_id: int,
scholars: list[ScholarProfile],
progress: RunProgress,
failure_summary: RunFailureSummary,
alert_summary: RunAlertSummary,
) -> None:
structured_log(
logger,
"info",
"ingestion.run_completed",
user_id=user_id,
crawl_run_id=run.id,
status=run.status.value,
scholar_count=len(scholars),
succeeded_count=progress.succeeded_count,
failed_count=progress.failed_count,
partial_count=progress.partial_count,
new_publication_count=run.new_pub_count,
blocked_failure_count=alert_summary.blocked_failure_count,
network_failure_count=alert_summary.network_failure_count,
retries_scheduled_count=failure_summary.retries_scheduled_count,
alert_flags=alert_summary.alert_flags,
)

110
app/services/ingestion/run_enrichment.py Normal file
View file

@ -0,0 +1,110 @@
from __future__ import annotations
import asyncio
import logging
from typing import Any
from sqlalchemy.ext.asyncio import AsyncSession
from app.db.models import CrawlRun, RunStatus
from app.logging_utils import structured_log
from app.services.ingestion.enrichment import EnrichmentRunner
logger = logging.getLogger(__name__)
_background_tasks: set[asyncio.Task[Any]] = set()
async def background_enrich(
session_factory: Any,
enrichment_runner: EnrichmentRunner,
*,
run_id: int,
intended_final_status: RunStatus,
openalex_api_key: str | None = None,
) -> None:
try:
async with session_factory() as session:
await enrichment_runner.enrich_pending_publications(
session,
run_id=run_id,
openalex_api_key=openalex_api_key,
)
run = await session.get(CrawlRun, run_id)
if run is not None and run.status == RunStatus.RESOLVING:
run.status = intended_final_status
await session.commit()
structured_log(
logger,
"info",
"ingestion.background_enrichment_complete",
run_id=run_id,
final_status=str(intended_final_status),
)
except Exception:
structured_log(
logger,
"exception",
"ingestion.background_enrichment_failed",
run_id=run_id,
)
try:
async with session_factory() as fallback_session:
run = await fallback_session.get(CrawlRun, run_id)
if run is not None and run.status == RunStatus.RESOLVING:
run.status = intended_final_status
await fallback_session.commit()
except Exception:
structured_log(
logger,
"exception",
"ingestion.background_enrichment_fallback_failed",
run_id=run_id,
)
async def inline_enrich_and_finalize(
db_session: AsyncSession,
enrichment_runner: EnrichmentRunner,
*,
run: CrawlRun,
user_settings: Any,
intended_final_status: RunStatus,
) -> None:
try:
await enrichment_runner.enrich_pending_publications(
db_session,
run_id=run.id,
openalex_api_key=getattr(user_settings, "openalex_api_key", None),
)
except Exception:
structured_log(
logger,
"exception",
"ingestion.enrichment_failed",
run_id=run.id,
)
if run.status == RunStatus.RESOLVING:
run.status = intended_final_status
await db_session.commit()
def spawn_background_enrichment_task(
session_factory: Any,
enrichment_runner: EnrichmentRunner,
*,
run_id: int,
intended_final_status: RunStatus,
openalex_api_key: str | None,
) -> None:
task = asyncio.create_task(
background_enrich(
session_factory,
enrichment_runner,
run_id=run_id,
intended_final_status=intended_final_status,
openalex_api_key=openalex_api_key,
)
)
_background_tasks.add(task)
task.add_done_callback(_background_tasks.discard)

135
app/services/ingestion/run_guards.py Normal file
View file

@ -0,0 +1,135 @@
from __future__ import annotations
import logging
from datetime import UTC, datetime
from typing import Any
from sqlalchemy.ext.asyncio import AsyncSession
from app.db.models import (
RunTriggerType,
ScholarProfile,
)
from app.logging_utils import structured_log
from app.services.ingestion import safety as run_safety_service
from app.services.ingestion.preflight import check_scholar_reachable
from app.services.ingestion.types import RunBlockedBySafetyPolicyError
from app.services.scholar.source import ScholarSource
from app.services.settings import application as user_settings_service
from app.settings import settings
logger = logging.getLogger(__name__)
async def load_user_settings_for_run(
db_session: AsyncSession,
*,
user_id: int,
trigger_type: RunTriggerType,
):
user_settings = await user_settings_service.get_or_create_settings(db_session, user_id=user_id)
await enforce_safety_gate(db_session, user_settings=user_settings, user_id=user_id, trigger_type=trigger_type)
return user_settings
async def enforce_safety_gate(
db_session: AsyncSession,
*,
user_settings,
user_id: int,
trigger_type: RunTriggerType,
) -> None:
now_utc = datetime.now(UTC)
previous = run_safety_service.get_safety_event_context(user_settings, now_utc=now_utc)
if run_safety_service.clear_expired_cooldown(user_settings, now_utc=now_utc):
await db_session.commit()
await db_session.refresh(user_settings)
structured_log(
logger,
"info",
"ingestion.cooldown_cleared",
user_id=user_id,
reason=previous.get("cooldown_reason"),
cooldown_until=previous.get("cooldown_until"),
)
now_utc = datetime.now(UTC)
if run_safety_service.is_cooldown_active(user_settings, now_utc=now_utc):
await raise_safety_blocked_start(
db_session,
user_settings=user_settings,
user_id=user_id,
trigger_type=trigger_type,
now_utc=now_utc,
)
async def raise_safety_blocked_start(
db_session: AsyncSession,
*,
user_settings,
user_id: int,
trigger_type: RunTriggerType,
now_utc: datetime,
) -> None:
safety_state = run_safety_service.register_cooldown_blocked_start(user_settings, now_utc=now_utc)
await db_session.commit()
structured_log(
logger,
"warning",
"ingestion.safety_policy_blocked_run_start",
user_id=user_id,
trigger_type=trigger_type.value,
reason=safety_state.get("cooldown_reason"),
cooldown_until=safety_state.get("cooldown_until"),
cooldown_remaining_seconds=safety_state.get("cooldown_remaining_seconds"),
blocked_start_count=((safety_state.get("counters") or {}).get("blocked_start_count")),
)
raise RunBlockedBySafetyPolicyError(
code="scrape_cooldown_active",
message="Scrape safety cooldown is active; run start is temporarily blocked.",
safety_state=safety_state,
)
async def run_preflight_guard(
db_session: AsyncSession,
source: ScholarSource,
*,
user_settings: Any,
user_id: int,
scholars: list[ScholarProfile],
) -> None:
if not scholars:
return
result = await check_scholar_reachable(
source,
scholar_id=scholars[0].scholar_id,
)
if result.passed:
return
now_utc = datetime.now(UTC)
safety_state, _ = run_safety_service.apply_run_safety_outcome(
user_settings,
run_id=0,
blocked_failure_count=1,
network_failure_count=0,
blocked_failure_threshold=1,
network_failure_threshold=1,
blocked_cooldown_seconds=settings.ingestion_safety_cooldown_blocked_seconds,
network_cooldown_seconds=settings.ingestion_safety_cooldown_network_seconds,
now_utc=now_utc,
)
await db_session.commit()
structured_log(
logger,
"warning",
"ingestion.cooldown_entered_preflight",
user_id=user_id,
block_reason=result.block_reason,
cooldown_until=safety_state.get("cooldown_until"),
)
raise RunBlockedBySafetyPolicyError(
code="scrape_cooldown_active",
message=f"Preflight detected Scholar block ({result.block_reason}). Cooldown activated.",
safety_state=safety_state,
)

18
app/services/ingestion/scheduler.py
View file

@ -125,9 +125,10 @@ class SchedulerService:
except asyncio.CancelledError:
raise
except Exception:
logger.exception(
structured_log(
logger,
"exception",
"scheduler.tick_failed",
extra={},
)
await asyncio.sleep(float(self._tick_seconds))
@ -263,7 +264,12 @@ class SchedulerService:
return None
except Exception:
await session.rollback()
logger.exception("scheduler.run_failed", extra={"user_id": candidate.user_id})
structured_log(
logger,
"exception",
"scheduler.run_failed",
user_id=candidate.user_id,
)
return None
async def _run_candidate(self, candidate: _AutoRunCandidate) -> None:
@ -300,4 +306,8 @@ class SchedulerService:
processed_count=processed,
)
except Exception:
logger.exception("scheduler.pdf_queue_drain_failed", extra={})
structured_log(
logger,
"exception",
"scheduler.pdf_queue_drain_failed",
)

308
app/services/ingestion/scholar_outcomes.py Normal file
View file

@ -0,0 +1,308 @@
from __future__ import annotations
import logging
from datetime import UTC, datetime
from typing import Any
from sqlalchemy.ext.asyncio import AsyncSession
from app.db.models import (
CrawlRun,
RunStatus,
ScholarProfile,
)
from app.logging_utils import structured_log
from app.services.ingestion.run_completion import build_failure_debug_context
from app.services.ingestion.types import (
PagedParseResult,
ScholarProcessingOutcome,
)
from app.services.scholar.parser import ParseState
logger = logging.getLogger(__name__)
def assert_valid_paged_parse_result(
*,
scholar_id: str,
paged_parse_result: PagedParseResult,
) -> None:
parsed_page = paged_parse_result.parsed_page
if parsed_page.state in {ParseState.OK, ParseState.NO_RESULTS} and any(
code.startswith("layout_") for code in parsed_page.warnings
):
raise RuntimeError(f"Layout warning marked as terminal for scholar_id={scholar_id}.")
for publication in paged_parse_result.publications:
if not publication.title.strip():
raise RuntimeError(f"Malformed publication title for scholar_id={scholar_id}.")
if publication.citation_count is not None and int(publication.citation_count) < 0:
raise RuntimeError(f"Negative citation count for scholar_id={scholar_id}.")
def apply_first_page_profile_metadata(
*,
scholar: ScholarProfile,
paged_parse_result: PagedParseResult,
run_dt: datetime,
) -> None:
first_page = paged_parse_result.first_page_parsed_page
if first_page.profile_name and not (scholar.display_name or "").strip():
scholar.display_name = first_page.profile_name
if first_page.profile_image_url:
scholar.profile_image_url = first_page.profile_image_url
scholar.last_initial_page_checked_at = run_dt
def build_result_entry(
*,
scholar: ScholarProfile,
start_cstart: int,
paged_parse_result: PagedParseResult,
) -> dict[str, Any]:
parsed_page = paged_parse_result.parsed_page
return {
"scholar_profile_id": scholar.id,
"scholar_id": scholar.scholar_id,
"state": parsed_page.state.value,
"state_reason": parsed_page.state_reason,
"outcome": "failed",
"attempt_count": len(paged_parse_result.attempt_log),
"publication_count": len(paged_parse_result.publications),
"start_cstart": start_cstart,
"articles_range": parsed_page.articles_range,
"warnings": parsed_page.warnings,
"has_show_more_button": parsed_page.has_show_more_button,
"pages_fetched": paged_parse_result.pages_fetched,
"pages_attempted": paged_parse_result.pages_attempted,
"has_more_remaining": paged_parse_result.has_more_remaining,
"pagination_truncated_reason": paged_parse_result.pagination_truncated_reason,
"continuation_cstart": paged_parse_result.continuation_cstart,
"skipped_no_change": paged_parse_result.skipped_no_change,
"initial_page_fingerprint_sha256": paged_parse_result.first_page_fingerprint_sha256,
}
def skipped_no_change_outcome(
*,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
) -> ScholarProcessingOutcome:
first_page = paged_parse_result.first_page_parsed_page
scholar.last_run_status = RunStatus.SUCCESS
scholar.last_run_dt = run_dt
result_entry["state"] = first_page.state.value
result_entry["state_reason"] = "no_change_initial_page_signature"
result_entry["outcome"] = "success"
result_entry["publication_count"] = 0
result_entry["warnings"] = first_page.warnings
result_entry["debug"] = {
"state_reason": "no_change_initial_page_signature",
"first_page_fingerprint_sha256": paged_parse_result.first_page_fingerprint_sha256,
"attempt_log": paged_parse_result.attempt_log,
"page_logs": paged_parse_result.page_logs,
}
return ScholarProcessingOutcome(
result_entry=result_entry,
succeeded_count_delta=1,
failed_count_delta=0,
partial_count_delta=0,
discovered_publication_count=0,
)
async def upsert_publications_outcome(
db_session: AsyncSession,
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
) -> ScholarProcessingOutcome:
parsed_page = paged_parse_result.parsed_page
publications = paged_parse_result.publications
had_page_failure = parsed_page.state not in {ParseState.OK, ParseState.NO_RESULTS}
has_partial_set = len(publications) > 0 and had_page_failure
if (not had_page_failure) or has_partial_set:
return await _upsert_success_or_exception(
db_session,
run=run,
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
has_partial_publication_set=has_partial_set,
)
return _parse_failure_outcome(
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
)
async def _upsert_success_or_exception(
db_session: AsyncSession,
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
has_partial_publication_set: bool,
) -> ScholarProcessingOutcome:
try:
return _upsert_success(
run=run,
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
has_partial_publication_set=has_partial_publication_set,
)
except Exception as exc:
return _upsert_exception_outcome(
run=run,
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
exc=exc,
)
def _upsert_success(
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
has_partial_publication_set: bool,
) -> ScholarProcessingOutcome:
discovered_count = paged_parse_result.discovered_publication_count
is_partial = (
paged_parse_result.has_more_remaining
or paged_parse_result.pagination_truncated_reason is not None
or has_partial_publication_set
)
scholar.last_run_status = RunStatus.PARTIAL_FAILURE if is_partial else RunStatus.SUCCESS
scholar.last_run_dt = run_dt
if not is_partial and paged_parse_result.first_page_fingerprint_sha256:
scholar.last_initial_page_fingerprint_sha256 = paged_parse_result.first_page_fingerprint_sha256
result_entry["outcome"] = "partial" if is_partial else "success"
if is_partial:
result_entry["debug"] = build_failure_debug_context(
fetch_result=paged_parse_result.fetch_result,
parsed_page=paged_parse_result.parsed_page,
attempt_log=paged_parse_result.attempt_log,
page_logs=paged_parse_result.page_logs,
)
return ScholarProcessingOutcome(
result_entry=result_entry,
succeeded_count_delta=1,
failed_count_delta=0,
partial_count_delta=1 if is_partial else 0,
discovered_publication_count=discovered_count,
)
def _upsert_exception_outcome(
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
exc: Exception,
) -> ScholarProcessingOutcome:
scholar.last_run_status = RunStatus.FAILED
scholar.last_run_dt = run_dt
result_entry["state"] = "ingestion_error"
result_entry["state_reason"] = "publication_upsert_exception"
result_entry["outcome"] = "failed"
result_entry["error"] = str(exc)
result_entry["debug"] = build_failure_debug_context(
fetch_result=paged_parse_result.fetch_result,
parsed_page=paged_parse_result.parsed_page,
attempt_log=paged_parse_result.attempt_log,
page_logs=paged_parse_result.page_logs,
exception=exc,
)
structured_log(
logger,
"exception",
"ingestion.scholar_failed",
crawl_run_id=run.id,
scholar_profile_id=scholar.id,
scholar_id=scholar.scholar_id,
)
return ScholarProcessingOutcome(result_entry, 0, 1, 0, 0)
def _parse_failure_outcome(
*,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
) -> ScholarProcessingOutcome:
scholar.last_run_status = RunStatus.FAILED
scholar.last_run_dt = run_dt
result_entry["debug"] = build_failure_debug_context(
fetch_result=paged_parse_result.fetch_result,
parsed_page=paged_parse_result.parsed_page,
attempt_log=paged_parse_result.attempt_log,
page_logs=paged_parse_result.page_logs,
)
structured_log(
logger,
"warning",
"ingestion.scholar_parse_failed",
scholar_profile_id=scholar.id,
scholar_id=scholar.scholar_id,
state=paged_parse_result.parsed_page.state.value,
state_reason=paged_parse_result.parsed_page.state_reason,
status_code=paged_parse_result.fetch_result.status_code,
)
return ScholarProcessingOutcome(result_entry, 0, 1, 0, 0)
def unexpected_scholar_exception_outcome(
*,
run: CrawlRun,
scholar: ScholarProfile,
start_cstart: int,
exc: Exception,
) -> ScholarProcessingOutcome:
scholar.last_run_status = RunStatus.FAILED
scholar.last_run_dt = datetime.now(UTC)
structured_log(
logger,
"exception",
"ingestion.scholar_unexpected_failure",
crawl_run_id=run.id,
scholar_profile_id=scholar.id,
scholar_id=scholar.scholar_id,
)
return ScholarProcessingOutcome(
result_entry={
"scholar_profile_id": scholar.id,
"scholar_id": scholar.scholar_id,
"state": "ingestion_error",
"state_reason": "scholar_processing_exception",
"outcome": "failed",
"attempt_count": 0,
"publication_count": 0,
"start_cstart": start_cstart,
"warnings": [],
"error": str(exc),
"debug": {"exception_type": type(exc).__name__, "exception_message": str(exc)},
},
succeeded_count_delta=0,
failed_count_delta=1,
partial_count_delta=0,
discovered_publication_count=0,
)

299
app/services/ingestion/scholar_processing.py
View file

@ -6,6 +6,7 @@ import random
from datetime import UTC, datetime
from typing import Any
from sqlalchemy.exc import InterfaceError, OperationalError
from sqlalchemy.ext.asyncio import AsyncSession
from app.db.models import (
@ -21,7 +22,15 @@ from app.services.ingestion.constants import (
)
from app.services.ingestion.pagination import PaginationEngine
from app.services.ingestion.publication_upsert import upsert_profile_publications
from app.services.ingestion.run_completion import apply_outcome_to_progress, build_failure_debug_context
from app.services.ingestion.run_completion import apply_outcome_to_progress
from app.services.ingestion.scholar_outcomes import (
apply_first_page_profile_metadata,
assert_valid_paged_parse_result,
build_result_entry,
skipped_no_change_outcome,
unexpected_scholar_exception_outcome,
upsert_publications_outcome,
)
from app.services.ingestion.types import (
PagedParseResult,
RunProgress,
@ -33,254 +42,6 @@ from app.services.scholar.state_detection import is_hard_challenge_reason
logger = logging.getLogger(__name__)
def assert_valid_paged_parse_result(
*,
scholar_id: str,
paged_parse_result: PagedParseResult,
) -> None:
parsed_page = paged_parse_result.parsed_page
if parsed_page.state in {ParseState.OK, ParseState.NO_RESULTS} and any(
code.startswith("layout_") for code in parsed_page.warnings
):
raise RuntimeError(f"Layout warning marked as terminal for scholar_id={scholar_id}.")
for publication in paged_parse_result.publications:
if not publication.title.strip():
raise RuntimeError(f"Malformed publication title for scholar_id={scholar_id}.")
if publication.citation_count is not None and int(publication.citation_count) < 0:
raise RuntimeError(f"Negative citation count for scholar_id={scholar_id}.")
def apply_first_page_profile_metadata(
*,
scholar: ScholarProfile,
paged_parse_result: PagedParseResult,
run_dt: datetime,
) -> None:
first_page = paged_parse_result.first_page_parsed_page
if first_page.profile_name and not (scholar.display_name or "").strip():
scholar.display_name = first_page.profile_name
if first_page.profile_image_url:
scholar.profile_image_url = first_page.profile_image_url
scholar.last_initial_page_checked_at = run_dt
def build_result_entry(
*,
scholar: ScholarProfile,
start_cstart: int,
paged_parse_result: PagedParseResult,
) -> dict[str, Any]:
parsed_page = paged_parse_result.parsed_page
return {
"scholar_profile_id": scholar.id,
"scholar_id": scholar.scholar_id,
"state": parsed_page.state.value,
"state_reason": parsed_page.state_reason,
"outcome": "failed",
"attempt_count": len(paged_parse_result.attempt_log),
"publication_count": len(paged_parse_result.publications),
"start_cstart": start_cstart,
"articles_range": parsed_page.articles_range,
"warnings": parsed_page.warnings,
"has_show_more_button": parsed_page.has_show_more_button,
"pages_fetched": paged_parse_result.pages_fetched,
"pages_attempted": paged_parse_result.pages_attempted,
"has_more_remaining": paged_parse_result.has_more_remaining,
"pagination_truncated_reason": paged_parse_result.pagination_truncated_reason,
"continuation_cstart": paged_parse_result.continuation_cstart,
"skipped_no_change": paged_parse_result.skipped_no_change,
"initial_page_fingerprint_sha256": paged_parse_result.first_page_fingerprint_sha256,
}
def skipped_no_change_outcome(
*,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
) -> ScholarProcessingOutcome:
first_page = paged_parse_result.first_page_parsed_page
scholar.last_run_status = RunStatus.SUCCESS
scholar.last_run_dt = run_dt
result_entry["state"] = first_page.state.value
result_entry["state_reason"] = "no_change_initial_page_signature"
result_entry["outcome"] = "success"
result_entry["publication_count"] = 0
result_entry["warnings"] = first_page.warnings
result_entry["debug"] = {
"state_reason": "no_change_initial_page_signature",
"first_page_fingerprint_sha256": paged_parse_result.first_page_fingerprint_sha256,
"attempt_log": paged_parse_result.attempt_log,
"page_logs": paged_parse_result.page_logs,
}
return ScholarProcessingOutcome(
result_entry=result_entry,
succeeded_count_delta=1,
failed_count_delta=0,
partial_count_delta=0,
discovered_publication_count=0,
)
async def upsert_publications_outcome(
db_session: AsyncSession,
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
) -> ScholarProcessingOutcome:
parsed_page = paged_parse_result.parsed_page
publications = paged_parse_result.publications
had_page_failure = parsed_page.state not in {ParseState.OK, ParseState.NO_RESULTS}
has_partial_set = len(publications) > 0 and had_page_failure
if (not had_page_failure) or has_partial_set:
return await _upsert_success_or_exception(
db_session,
run=run,
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
has_partial_publication_set=has_partial_set,
)
return _parse_failure_outcome(
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
)
async def _upsert_success_or_exception(
db_session: AsyncSession,
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
has_partial_publication_set: bool,
) -> ScholarProcessingOutcome:
try:
return _upsert_success(
run=run,
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
has_partial_publication_set=has_partial_publication_set,
)
except Exception as exc:
return _upsert_exception_outcome(
run=run,
scholar=scholar,
run_dt=run_dt,
paged_parse_result=paged_parse_result,
result_entry=result_entry,
exc=exc,
)
def _upsert_success(
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
has_partial_publication_set: bool,
) -> ScholarProcessingOutcome:
discovered_count = paged_parse_result.discovered_publication_count
is_partial = (
paged_parse_result.has_more_remaining
or paged_parse_result.pagination_truncated_reason is not None
or has_partial_publication_set
)
scholar.last_run_status = RunStatus.PARTIAL_FAILURE if is_partial else RunStatus.SUCCESS
scholar.last_run_dt = run_dt
if not is_partial and paged_parse_result.first_page_fingerprint_sha256:
scholar.last_initial_page_fingerprint_sha256 = paged_parse_result.first_page_fingerprint_sha256
result_entry["outcome"] = "partial" if is_partial else "success"
if is_partial:
result_entry["debug"] = build_failure_debug_context(
fetch_result=paged_parse_result.fetch_result,
parsed_page=paged_parse_result.parsed_page,
attempt_log=paged_parse_result.attempt_log,
page_logs=paged_parse_result.page_logs,
)
return ScholarProcessingOutcome(
result_entry=result_entry,
succeeded_count_delta=1,
failed_count_delta=0,
partial_count_delta=1 if is_partial else 0,
discovered_publication_count=discovered_count,
)
def _upsert_exception_outcome(
*,
run: CrawlRun,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
exc: Exception,
) -> ScholarProcessingOutcome:
scholar.last_run_status = RunStatus.FAILED
scholar.last_run_dt = run_dt
result_entry["state"] = "ingestion_error"
result_entry["state_reason"] = "publication_upsert_exception"
result_entry["outcome"] = "failed"
result_entry["error"] = str(exc)
result_entry["debug"] = build_failure_debug_context(
fetch_result=paged_parse_result.fetch_result,
parsed_page=paged_parse_result.parsed_page,
attempt_log=paged_parse_result.attempt_log,
page_logs=paged_parse_result.page_logs,
exception=exc,
)
logger.exception(
"ingestion.scholar_failed",
extra={
"crawl_run_id": run.id,
"scholar_profile_id": scholar.id,
"scholar_id": scholar.scholar_id,
},
)
return ScholarProcessingOutcome(result_entry, 0, 1, 0, 0)
def _parse_failure_outcome(
*,
scholar: ScholarProfile,
run_dt: datetime,
paged_parse_result: PagedParseResult,
result_entry: dict[str, Any],
) -> ScholarProcessingOutcome:
scholar.last_run_status = RunStatus.FAILED
scholar.last_run_dt = run_dt
result_entry["debug"] = build_failure_debug_context(
fetch_result=paged_parse_result.fetch_result,
parsed_page=paged_parse_result.parsed_page,
attempt_log=paged_parse_result.attempt_log,
page_logs=paged_parse_result.page_logs,
)
structured_log(
logger,
"warning",
"ingestion.scholar_parse_failed",
scholar_profile_id=scholar.id,
scholar_id=scholar.scholar_id,
state=paged_parse_result.parsed_page.state.value,
state_reason=paged_parse_result.parsed_page.state_reason,
status_code=paged_parse_result.fetch_result.status_code,
)
return ScholarProcessingOutcome(result_entry, 0, 1, 0, 0)
async def sync_continuation_queue(
db_session: AsyncSession,
*,
@ -396,6 +157,8 @@ async def process_scholar(
queue_delay_seconds=queue_delay_seconds,
)
return outcome
except (OperationalError, InterfaceError):
raise
except Exception as exc:
return unexpected_scholar_exception_outcome(
run=run,
@ -492,44 +255,6 @@ async def _resolve_scholar_outcome(
)
def unexpected_scholar_exception_outcome(
*,
run: CrawlRun,
scholar: ScholarProfile,
start_cstart: int,
exc: Exception,
) -> ScholarProcessingOutcome:
scholar.last_run_status = RunStatus.FAILED
scholar.last_run_dt = datetime.now(UTC)
logger.exception(
"ingestion.scholar_unexpected_failure",
extra={
"crawl_run_id": run.id,
"scholar_profile_id": scholar.id,
"scholar_id": scholar.scholar_id,
},
)
return ScholarProcessingOutcome(
result_entry={
"scholar_profile_id": scholar.id,
"scholar_id": scholar.scholar_id,
"state": "ingestion_error",
"state_reason": "scholar_processing_exception",
"outcome": "failed",
"attempt_count": 0,
"publication_count": 0,
"start_cstart": start_cstart,
"warnings": [],
"error": str(exc),
"debug": {"exception_type": type(exc).__name__, "exception_message": str(exc)},
},
succeeded_count_delta=0,
failed_count_delta=1,
partial_count_delta=0,
discovered_publication_count=0,
)
def _is_hard_challenge_outcome(outcome: ScholarProcessingOutcome) -> bool:
entry = outcome.result_entry
return str(entry.get("state", "")) == ParseState.BLOCKED_OR_CAPTCHA.value and is_hard_challenge_reason(

27
app/services/openalex/client.py
View file

@ -8,6 +8,7 @@ from tenacity import (
wait_exponential,
)
from app.logging_utils import structured_log
from app.services.openalex.types import OpenAlexWork
logger = logging.getLogger(__name__)
@ -82,7 +83,13 @@ class OpenAlexClient:
raise OpenAlexBudgetExhaustedError("Daily API budget exhausted; retrying won't help until midnight UTC")
raise OpenAlexRateLimitError("Rate limit exceeded fetching OpenAlex work by DOI")
if response.status_code >= 400:
logger.warning("OpenAlex API error: %s %s", response.status_code, response.text[:500])
structured_log(
logger,
"warning",
"openalex.api_error",
status_code=response.status_code,
response_preview=response.text[:500],
)
raise OpenAlexClientError(f"API Error {response.status_code}")
data = response.json()
@ -130,7 +137,14 @@ class OpenAlexClient:
raise OpenAlexBudgetExhaustedError("Daily API budget exhausted; retrying won't help until midnight UTC")
raise OpenAlexRateLimitError("Rate limit exceeded fetching OpenAlex works list")
if response.status_code >= 400:
logger.warning("OpenAlex API error (filters=%s): %s %s", filters, response.status_code, response.text[:500])
structured_log(
logger,
"warning",
"openalex.api_error_with_filters",
filters=filters,
status_code=response.status_code,
response_preview=response.text[:500],
)
raise OpenAlexClientError(f"API Error {response.status_code}")
data = response.json()
@ -140,8 +154,13 @@ class OpenAlexClient:
for raw_work in results:
try:
parsed_works.append(OpenAlexWork.from_api_dict(raw_work))
except Exception as e:
logger.warning("Failed to parse OpenAlex raw dict: %s", e)
except Exception as exc:
structured_log(
logger,
"warning",
"openalex.parse_failed",
error=str(exc),
)
continue
return parsed_works

1
app/services/publications/pdf_queue_common.py
View file

@ -4,6 +4,7 @@ from datetime import UTC, datetime
from app.db.models import PublicationPdfJob, PublicationPdfJobEvent
PDF_STATUS_UNTRACKED = "untracked"
PDF_STATUS_QUEUED = "queued"
PDF_STATUS_RUNNING = "running"
PDF_STATUS_RESOLVED = "resolved"

11
app/services/publications/pdf_queue_queries.py
View file

@ -16,14 +16,13 @@ from app.db.models import (
)
from app.services.publication_identifiers import application as identifier_service
from app.services.publication_identifiers.types import DisplayIdentifier
from app.services.publications.pdf_queue_common import (
PDF_STATUS_QUEUED,
PDF_STATUS_RUNNING,
PDF_STATUS_UNTRACKED,
)
from app.services.publications.types import PublicationListItem
PDF_STATUS_UNTRACKED = "untracked"
PDF_STATUS_QUEUED = "queued"
PDF_STATUS_RUNNING = "running"
PDF_STATUS_RESOLVED = "resolved"
PDF_STATUS_FAILED = "failed"
def _bounded_limit(limit: int, *, max_value: int = 500) -> int:
return max(1, min(int(limit), max_value))

2
app/services/publications/pdf_queue_resolution.py
View file

@ -251,7 +251,7 @@ def _drop_finished_task(task: asyncio.Task[None]) -> None:
try:
task.result()
except Exception:
logger.exception("publications.pdf_queue.task_failed")
structured_log(logger, "exception", "publications.pdf_queue.task_failed")
def schedule_rows(

14
app/services/publications/queries.py
View file

@ -16,6 +16,12 @@ from app.db.models import (
ScholarPublication,
)
from app.services.publications.modes import MODE_LATEST, MODE_UNREAD
from app.services.publications.pdf_queue_common import (
PDF_STATUS_FAILED,
PDF_STATUS_QUEUED,
PDF_STATUS_RESOLVED,
PDF_STATUS_RUNNING,
)
from app.services.publications.types import PublicationListItem, UnreadPublicationItem
@ -29,10 +35,10 @@ def _normalized_citation_count(value: object) -> int:
def _pdf_status_sort_rank():
return case(
(Publication.pdf_url.is_not(None), 4),
(PublicationPdfJob.status == "resolved", 4),
(PublicationPdfJob.status == "running", 3),
(PublicationPdfJob.status == "queued", 2),
(PublicationPdfJob.status == "failed", 0),
(PublicationPdfJob.status == PDF_STATUS_RESOLVED, 4),
(PublicationPdfJob.status == PDF_STATUS_RUNNING, 3),
(PublicationPdfJob.status == PDF_STATUS_QUEUED, 2),
(PublicationPdfJob.status == PDF_STATUS_FAILED, 0),
else_=1,
)

24
app/services/runs/events.py
View file

@ -4,6 +4,8 @@ import logging
from collections.abc import AsyncGenerator
from typing import Any
from app.logging_utils import structured_log
logger = logging.getLogger(__name__)
@ -17,7 +19,13 @@ class RunEventPublisher:
self._subscribers[run_id] = set()
queue: asyncio.Queue[Any] = asyncio.Queue()
self._subscribers[run_id].add(queue)
logger.debug(f"New subscriber for run {run_id}. Total: {len(self._subscribers[run_id])}")
structured_log(
logger,
"debug",
"runs.event_subscriber_added",
run_id=run_id,
subscriber_count=len(self._subscribers[run_id]),
)
return queue
def unsubscribe(self, run_id: int, queue: asyncio.Queue) -> None:
@ -37,7 +45,12 @@ class RunEventPublisher:
try:
queue.put_nowait(message)
except asyncio.QueueFull:
logger.warning(f"Subscriber queue full for run {run_id}, dropping message")
structured_log(
logger,
"warning",
"runs.event_subscriber_queue_full",
run_id=run_id,
)
run_events = RunEventPublisher()
@ -54,7 +67,12 @@ async def event_generator(run_id: int) -> AsyncGenerator[str, None]:
data_str = json.dumps(message["data"])
yield f"event: {event_type}\ndata: {data_str}\n\n"
except asyncio.CancelledError:
logger.debug(f"Client disconnected from SSE stream for run {run_id}")
structured_log(
logger,
"debug",
"runs.event_stream_disconnected",
run_id=run_id,
)
raise
finally:
run_events.unsubscribe(run_id, queue)

5
app/services/scholar/profile_rows.py
View file

@ -131,7 +131,10 @@ def parse_citation_count(parts: list[str]) -> int | None:
text = normalize_space(" ".join(parts))
if not text:
return 0
digits = re.sub(r"\D+", "", text)
match = re.search(r"[\d,]+", text)
if not match:
return None
digits = match.group(0).replace(",", "")
if not digits:
return None
return int(digits)

2
app/services/unpaywall/application.py
View file

@ -393,7 +393,7 @@ async def resolve_publication_oa_outcomes(
return {}
email = _email_for_request(request_email)
if email is None:
logger.debug("unpaywall.resolve_skipped_missing_email")
structured_log(logger, "debug", "unpaywall.resolve_skipped_missing_email")
return {}
import httpx

700
frontend/package-lock.json generated
View file

@ -15,7 +15,9 @@
"devDependencies": {
"@types/node": "^22.10.2",
"@vitejs/plugin-vue": "^5.2.1",
"@vue/test-utils": "^2.4.6",
"autoprefixer": "^10.4.21",
"happy-dom": "^20.7.0",
"postcss": "^8.5.3",
"tailwindcss": "^3.4.17",
"typescript": "^5.7.2",
@ -474,6 +476,24 @@
"node": ">=12"
}
},
"node_modules/@isaacs/cliui": {
"version": "8.0.2",
"resolved": "https://registry.npmjs.org/@isaacs/cliui/-/cliui-8.0.2.tgz",
"integrity": "sha512-O8jcjabXaleOG9DQ0+ARXWZBTfnP4WNAqzuiJK7ll44AmxGKv/J2M4TPjxjY3znBCfvBXFzucm1twdyFybFqEA==",
"dev": true,
"license": "ISC",
"dependencies": {
"string-width": "^5.1.2",
"string-width-cjs": "npm:string-width@^4.2.0",
"strip-ansi": "^7.0.1",
"strip-ansi-cjs": "npm:strip-ansi@^6.0.1",
"wrap-ansi": "^8.1.0",
"wrap-ansi-cjs": "npm:wrap-ansi@^7.0.0"
},
"engines": {
"node": ">=12"
}
},
"node_modules/@jridgewell/gen-mapping": {
"version": "0.3.13",
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"integrity": "sha512-vtK/94akxsTMhe0/cbfpR+syPuszcuwhqVjJq26CuNDgFGj682oRBXOP5MJpv2r7JtE8MsiepGIqvvOTBwn2vA==",
"dev": true,
"license": "ISC"
},
"node_modules/queue-microtask": {
"version": "1.2.3",
"resolved": "https://registry.npmjs.org/queue-microtask/-/queue-microtask-1.2.3.tgz",
@ -2431,6 +2825,42 @@
"queue-microtask": "^1.2.2"
}
},
"node_modules/semver": {
"version": "7.7.4",
"resolved": "https://registry.npmjs.org/semver/-/semver-7.7.4.tgz",
"integrity": "sha512-vFKC2IEtQnVhpT78h1Yp8wzwrf8CM+MzKMHGJZfBtzhZNycRFnXsHk6E5TxIkkMsgNS7mdX3AGB7x2QM2di4lA==",
"dev": true,
"license": "ISC",
"bin": {
"semver": "bin/semver.js"
},
"engines": {
"node": ">=10"
}
},
"node_modules/shebang-command": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/shebang-command/-/shebang-command-2.0.0.tgz",
"integrity": "sha512-kHxr2zZpYtdmrN1qDjrrX/Z1rR1kG8Dx+gkpK1G4eXmvXswmcE1hTWBWYUzlraYw1/yZp6YuDY77YtvbN0dmDA==",
"dev": true,
"license": "MIT",
"dependencies": {
"shebang-regex": "^3.0.0"
},
"engines": {
"node": ">=8"
}
},
"node_modules/shebang-regex": {
"version": "3.0.0",
"resolved": "https://registry.npmjs.org/shebang-regex/-/shebang-regex-3.0.0.tgz",
"integrity": "sha512-7++dFhtcx3353uBaq8DDR4NuxBetBzC7ZQOhmTQInHEd6bSrXdiEyzCvG07Z44UYdLShWUyXt5M/yhz8ekcb1A==",
"dev": true,
"license": "MIT",
"engines": {
"node": ">=8"
}
},
"node_modules/siginfo": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/siginfo/-/siginfo-2.0.0.tgz",
@ -2438,6 +2868,19 @@
"dev": true,
"license": "ISC"
},
"node_modules/signal-exit": {
"version": "4.1.0",
"resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-4.1.0.tgz",
"integrity": "sha512-bzyZ1e88w9O1iNJbKnOlvYTrWPDl46O1bG0D3XInv+9tkPrxrN8jUUTiFlDkkmKWgn1M6CfIA13SuGqOa9Korw==",
"dev": true,
"license": "ISC",
"engines": {
"node": ">=14"
},
"funding": {
"url": "https://github.com/sponsors/isaacs"
}
},
"node_modules/source-map-js": {
"version": "1.2.1",
"resolved": "https://registry.npmjs.org/source-map-js/-/source-map-js-1.2.1.tgz",
@ -2461,6 +2904,110 @@
"dev": true,
"license": "MIT"
},
"node_modules/string-width": {
"version": "5.1.2",
"resolved": "https://registry.npmjs.org/string-width/-/string-width-5.1.2.tgz",
"integrity": "sha512-HnLOCR3vjcY8beoNLtcjZ5/nxn2afmME6lhrDrebokqMap+XbeW8n9TXpPDOqdGK5qcI3oT0GKTW6wC7EMiVqA==",
"dev": true,
"license": "MIT",
"dependencies": {
"eastasianwidth": "^0.2.0",
"emoji-regex": "^9.2.2",
"strip-ansi": "^7.0.1"
},
"engines": {
"node": ">=12"
},
"funding": {
"url": "https://github.com/sponsors/sindresorhus"
}
},
"node_modules/string-width-cjs": {
"name": "string-width",
"version": "4.2.3",
"resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
"integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
"dev": true,
"license": "MIT",
"dependencies": {
"emoji-regex": "^8.0.0",
"is-fullwidth-code-point": "^3.0.0",
"strip-ansi": "^6.0.1"
},
"engines": {
"node": ">=8"
}
},
"node_modules/string-width-cjs/node_modules/ansi-regex": {
"version": "5.0.1",
"resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
"integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
"dev": true,
"license": "MIT",
"engines": {
"node": ">=8"
}
},
"node_modules/string-width-cjs/node_modules/emoji-regex": {
"version": "8.0.0",
"resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
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"dev": true,
"license": "MIT"
},
"node_modules/string-width-cjs/node_modules/strip-ansi": {
"version": "6.0.1",
"resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
"integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
"dev": true,
"license": "MIT",
"dependencies": {
"ansi-regex": "^5.0.1"
},
"engines": {
"node": ">=8"
}
},
"node_modules/strip-ansi": {
"version": "7.2.0",
"resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-7.2.0.tgz",
"integrity": "sha512-yDPMNjp4WyfYBkHnjIRLfca1i6KMyGCtsVgoKe/z1+6vukgaENdgGBZt+ZmKPc4gavvEZ5OgHfHdrazhgNyG7w==",
"dev": true,
"license": "MIT",
"dependencies": {
"ansi-regex": "^6.2.2"
},
"engines": {
"node": ">=12"
},
"funding": {
"url": "https://github.com/chalk/strip-ansi?sponsor=1"
}
},
"node_modules/strip-ansi-cjs": {
"name": "strip-ansi",
"version": "6.0.1",
"resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
"integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
"dev": true,
"license": "MIT",
"dependencies": {
"ansi-regex": "^5.0.1"
},
"engines": {
"node": ">=8"
}
},
"node_modules/strip-ansi-cjs/node_modules/ansi-regex": {
"version": "5.0.1",
"resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
"integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
"dev": true,
"license": "MIT",
"engines": {
"node": ">=8"
}
},
"node_modules/sucrase": {
"version": "3.35.1",
"resolved": "https://registry.npmjs.org/sucrase/-/sucrase-3.35.1.tgz",
@ -2906,6 +3453,13 @@
}
}
},
"node_modules/vue-component-type-helpers": {
"version": "2.2.12",
"resolved": "https://registry.npmjs.org/vue-component-type-helpers/-/vue-component-type-helpers-2.2.12.tgz",
"integrity": "sha512-YbGqHZ5/eW4SnkPNR44mKVc6ZKQoRs/Rux1sxC6rdwXb4qpbOSYfDr9DsTHolOTGmIKgM9j141mZbBeg05R1pw==",
"dev": true,
"license": "MIT"
},
"node_modules/vue-demi": {
"version": "0.14.10",
"resolved": "https://registry.npmjs.org/vue-demi/-/vue-demi-0.14.10.tgz",
@ -2964,6 +3518,32 @@
"typescript": ">=5.0.0"
}
},
"node_modules/whatwg-mimetype": {
"version": "3.0.0",
"resolved": "https://registry.npmjs.org/whatwg-mimetype/-/whatwg-mimetype-3.0.0.tgz",
"integrity": "sha512-nt+N2dzIutVRxARx1nghPKGv1xHikU7HKdfafKkLNLindmPU/ch3U31NOCGGA/dmPcmb1VlofO0vnKAcsm0o/Q==",
"dev": true,
"license": "MIT",
"engines": {
"node": ">=12"
}
},
"node_modules/which": {
"version": "2.0.2",
"resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
"integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
"dev": true,
"license": "ISC",
"dependencies": {
"isexe": "^2.0.0"
},
"bin": {
"node-which": "bin/node-which"
},
"engines": {
"node": ">= 8"
}
},
"node_modules/why-is-node-running": {
"version": "2.3.0",
"resolved": "https://registry.npmjs.org/why-is-node-running/-/why-is-node-running-2.3.0.tgz",
@ -2980,6 +3560,126 @@
"engines": {
"node": ">=8"
}
},
"node_modules/wrap-ansi": {
"version": "8.1.0",
"resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz",
"integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==",
"dev": true,
"license": "MIT",
"dependencies": {
"ansi-styles": "^6.1.0",
"string-width": "^5.0.1",
"strip-ansi": "^7.0.1"
},
"engines": {
"node": ">=12"
},
"funding": {
"url": "https://github.com/chalk/wrap-ansi?sponsor=1"
}
},
"node_modules/wrap-ansi-cjs": {
"name": "wrap-ansi",
"version": "7.0.0",
"resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz",
"integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==",
"dev": true,
"license": "MIT",
"dependencies": {
"ansi-styles": "^4.0.0",
"string-width": "^4.1.0",
"strip-ansi": "^6.0.0"
},
"engines": {
"node": ">=10"
},
"funding": {
"url": "https://github.com/chalk/wrap-ansi?sponsor=1"
}
},
"node_modules/wrap-ansi-cjs/node_modules/ansi-regex": {
"version": "5.0.1",
"resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
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"dev": true,
"license": "MIT",
"engines": {
"node": ">=8"
}
},
"node_modules/wrap-ansi-cjs/node_modules/ansi-styles": {
"version": "4.3.0",
"resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
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"dev": true,
"license": "MIT",
"dependencies": {
"color-convert": "^2.0.1"
},
"engines": {
"node": ">=8"
},
"funding": {
"url": "https://github.com/chalk/ansi-styles?sponsor=1"
}
},
"node_modules/wrap-ansi-cjs/node_modules/emoji-regex": {
"version": "8.0.0",
"resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
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"dev": true,
"license": "MIT"
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"version": "4.2.3",
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"dev": true,
"license": "MIT",
"dependencies": {
"emoji-regex": "^8.0.0",
"is-fullwidth-code-point": "^3.0.0",
"strip-ansi": "^6.0.1"
},
"engines": {
"node": ">=8"
}
},
"node_modules/wrap-ansi-cjs/node_modules/strip-ansi": {
"version": "6.0.1",
"resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
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"dev": true,
"license": "MIT",
"dependencies": {
"ansi-regex": "^5.0.1"
},
"engines": {
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"version": "8.19.0",
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"dev": true,
"license": "MIT",
"engines": {
"node": ">=10.0.0"
},
"peerDependencies": {
"bufferutil": "^4.0.1",
"utf-8-validate": ">=5.0.2"
},
"peerDependenciesMeta": {
"bufferutil": {
"optional": true
},
"utf-8-validate": {
"optional": true
}
}
}
}
}

2
frontend/package.json
View file

@ -21,7 +21,9 @@
"devDependencies": {
"@types/node": "^22.10.2",
"@vitejs/plugin-vue": "^5.2.1",
"@vue/test-utils": "^2.4.6",
"autoprefixer": "^10.4.21",
"happy-dom": "^20.7.0",
"postcss": "^8.5.3",
"tailwindcss": "^3.4.17",
"typescript": "^5.7.2",

51
frontend/src/composables/useRequestState.test.ts Normal file
View file

@ -0,0 +1,51 @@
import { describe, expect, it } from "vitest";
import { ApiRequestError } from "@/lib/api/errors";
import { useRequestState } from "@/composables/useRequestState";
describe("useRequestState", () => {
it("initializes with all values null", () => {
const { errorMessage, errorRequestId, successMessage } = useRequestState();
expect(errorMessage.value).toBeNull();
expect(errorRequestId.value).toBeNull();
expect(successMessage.value).toBeNull();
});
it("assignError extracts message and requestId from ApiRequestError", () => {
const { errorMessage, errorRequestId, assignError } = useRequestState();
assignError(
new ApiRequestError({ status: 409, code: "conflict", message: "Conflict occurred", requestId: "req-42" }),
"fallback",
);
expect(errorMessage.value).toBe("Conflict occurred");
expect(errorRequestId.value).toBe("req-42");
});
it("assignError uses Error.message for generic errors", () => {
const { errorMessage, errorRequestId, assignError } = useRequestState();
assignError(new Error("something broke"), "fallback");
expect(errorMessage.value).toBe("something broke");
expect(errorRequestId.value).toBeNull();
});
it("assignError uses fallback for non-Error values", () => {
const { errorMessage, assignError } = useRequestState();
assignError("not an error object", "fallback text");
expect(errorMessage.value).toBe("fallback text");
});
it("setSuccess sets the success message", () => {
const { successMessage, setSuccess } = useRequestState();
setSuccess("Operation completed");
expect(successMessage.value).toBe("Operation completed");
});
it("clearAlerts resets all messages", () => {
const { errorMessage, errorRequestId, successMessage, assignError, setSuccess, clearAlerts } = useRequestState();
assignError(new ApiRequestError({ status: 500, code: "err", message: "fail", requestId: "r1" }), "fb");
setSuccess("ok");
clearAlerts();
expect(errorMessage.value).toBeNull();
expect(errorRequestId.value).toBeNull();
expect(successMessage.value).toBeNull();
});
});

40
frontend/src/composables/useRequestState.ts Normal file
View file

@ -0,0 +1,40 @@
import { ref } from "vue";
import { ApiRequestError } from "@/lib/api/errors";
export function useRequestState() {
const errorMessage = ref<string | null>(null);
const errorRequestId = ref<string | null>(null);
const successMessage = ref<string | null>(null);
function clearAlerts(): void {
errorMessage.value = null;
errorRequestId.value = null;
successMessage.value = null;
}
function assignError(error: unknown, fallback: string): void {
if (error instanceof ApiRequestError) {
errorMessage.value = error.message;
errorRequestId.value = error.requestId;
return;
}
if (error instanceof Error && error.message) {
errorMessage.value = error.message;
return;
}
errorMessage.value = fallback;
}
function setSuccess(message: string): void {
successMessage.value = message;
}
return {
errorMessage,
errorRequestId,
successMessage,
clearAlerts,
assignError,
setSuccess,
};
}

139
frontend/src/features/publications/components/PublicationTableRow.test.ts Normal file
View file

@ -0,0 +1,139 @@
// @vitest-environment happy-dom
import { describe, expect, it } from "vitest";
import { mount } from "@vue/test-utils";
import PublicationTableRow from "./PublicationTableRow.vue";
import type { PublicationItem } from "@/features/publications";
function buildItem(overrides: Partial<PublicationItem> = {}): PublicationItem {
return {
publication_id: 1,
scholar_profile_id: 10,
title: "Test Publication",
year: 2025,
citation_count: 42,
pub_url: "https://example.com/pub",
pdf_url: null,
pdf_status: null,
is_read: false,
is_favorite: false,
is_new_in_latest_run: true,
scholar_label: "Dr. Test",
first_seen_at: "2025-01-15T00:00:00Z",
display_identifier: null,
...overrides,
} as PublicationItem;
}
const defaultProps = {
item: buildItem(),
itemKey: "pub-1",
selected: false,
favoriteUpdating: false,
retrying: false,
canRetry: false,
};
describe("PublicationTableRow", () => {
it("renders the publication title", () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
expect(wrapper.text()).toContain("Test Publication");
});
it("renders scholar label", () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
expect(wrapper.text()).toContain("Dr. Test");
});
it("renders year and citation count", () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
expect(wrapper.text()).toContain("2025");
expect(wrapper.text()).toContain("42");
});
it("shows New badge when is_new_in_latest_run is true", () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
expect(wrapper.text()).toContain("New");
});
it("shows Seen badge when is_new_in_latest_run is false", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, item: buildItem({ is_new_in_latest_run: false }) },
});
expect(wrapper.text()).toContain("Seen");
});
it("shows Unread badge for unread items", () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
expect(wrapper.text()).toContain("Unread");
});
it("shows Read badge for read items", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, item: buildItem({ is_read: true }) },
});
expect(wrapper.text()).toContain("Read");
});
it("disables checkbox when item is read", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, item: buildItem({ is_read: true }) },
});
const checkbox = wrapper.find('input[type="checkbox"]');
expect((checkbox.element as HTMLInputElement).disabled).toBe(true);
});
it("emits toggle-selection when checkbox is changed", async () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
await wrapper.find('input[type="checkbox"]').trigger("change");
expect(wrapper.emitted("toggle-selection")).toHaveLength(1);
});
it("emits toggle-favorite when star button is clicked", async () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
await wrapper.find(".favorite-star-button").trigger("click");
expect(wrapper.emitted("toggle-favorite")).toHaveLength(1);
});
it("shows filled star when item is favorite", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, item: buildItem({ is_favorite: true }) },
});
expect(wrapper.find(".favorite-star-on").exists()).toBe(true);
expect(wrapper.text()).toContain("★");
});
it("shows empty star when item is not favorite", () => {
const wrapper = mount(PublicationTableRow, { props: defaultProps });
expect(wrapper.find(".favorite-star-off").exists()).toBe(true);
expect(wrapper.text()).toContain("☆");
});
it("shows Available link when pdf_url is set", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, item: buildItem({ pdf_url: "https://example.com/paper.pdf" }) },
});
expect(wrapper.text()).toContain("Available");
});
it("shows retry button when canRetry is true and no pdf_url", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, canRetry: true },
});
expect(wrapper.text()).toContain("Missing (Retry)");
});
it("emits retry-pdf when retry button is clicked", async () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, canRetry: true },
});
await wrapper.find(".pdf-retry-button").trigger("click");
expect(wrapper.emitted("retry-pdf")).toHaveLength(1);
});
it("shows Retrying... label when retrying", () => {
const wrapper = mount(PublicationTableRow, {
props: { ...defaultProps, canRetry: true, retrying: true },
});
expect(wrapper.text()).toContain("Retrying...");
});
});

178
frontend/src/features/publications/components/PublicationTableRow.vue Normal file
View file

@ -0,0 +1,178 @@
<script setup lang="ts">
import AppBadge from "@/components/ui/AppBadge.vue";
import type { PublicationItem } from "@/features/publications";
const props = defineProps<{
item: PublicationItem;
itemKey: string;
selected: boolean;
favoriteUpdating: boolean;
retrying: boolean;
canRetry: boolean;
}>();
const emit = defineEmits<{
(e: "toggle-selection", event: Event): void;
(e: "toggle-favorite"): void;
(e: "retry-pdf"): void;
}>();
function primaryUrl(): string | null {
return props.item.pub_url || props.item.pdf_url;
}
function identifierUrl(): string | null {
return props.item.display_identifier?.url ?? null;
}
function identifierLabel(): string | null {
return props.item.display_identifier?.label ?? null;
}
function pdfPendingLabel(): string {
if (props.item.pdf_status === "queued") return "Queued";
if (props.item.pdf_status === "running") return "Resolving...";
if (props.item.pdf_status === "failed") return "Missing";
return "Untracked";
}
function formatDate(value: string): string {
const asDate = new Date(value);
if (Number.isNaN(asDate.getTime())) return value;
return asDate.toLocaleDateString();
}
</script>
<template>
<tr>
<td>
<input
type="checkbox"
class="h-4 w-4 rounded border-stroke-interactive bg-surface-input text-brand-600 focus-visible:ring-2 focus-visible:ring-focus-ring focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset"
:checked="selected"
:disabled="item.is_read"
:aria-label="`Select publication ${item.title}`"
@change="emit('toggle-selection', $event)"
/>
</td>
<td>
<button
type="button"
class="favorite-star-button"
:class="item.is_favorite ? 'favorite-star-on' : 'favorite-star-off'"
:aria-label="item.is_favorite ? `Remove ${item.title} from favorites` : `Add ${item.title} to favorites`"
:aria-pressed="item.is_favorite"
:disabled="favoriteUpdating"
@click="emit('toggle-favorite')"
>
{{ item.is_favorite ? "★" : "☆" }}
</button>
</td>
<td class="max-w-0">
<div class="grid min-w-0 gap-1">
<a
v-if="primaryUrl()"
:href="primaryUrl() || ''"
target="_blank"
rel="noreferrer"
class="link-inline block truncate font-medium"
:title="item.title"
>
{{ item.title }}
</a>
<span v-else class="block truncate font-medium" :title="item.title">{{ item.title }}</span>
<a
v-if="identifierUrl()"
:href="identifierUrl() || ''"
target="_blank"
rel="noreferrer"
class="link-inline block truncate text-xs"
:title="identifierLabel() || ''"
>
{{ identifierLabel() }}
</a>
</div>
</td>
<td>
<span class="block truncate" :title="item.scholar_label">{{ item.scholar_label }}</span>
</td>
<td class="whitespace-nowrap">
<a
v-if="item.pdf_url"
:href="item.pdf_url"
target="_blank"
rel="noreferrer"
class="pdf-link-button"
title="Open PDF"
>
<svg class="mr-1 h-3 w-3" fill="none" viewBox="0 0 24 24" stroke="currentColor">
<path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M10 6H6a2 2 0 00-2 2v10a2 2 0 002 2h10a2 2 0 002-2v-4M14 4h6m0 0v6m0-6L10 14" />
</svg>
Available
</a>
<button
v-else-if="canRetry"
type="button"
class="pdf-retry-button"
:disabled="retrying"
@click="emit('retry-pdf')"
>
<svg v-if="retrying" class="mr-1 h-3 w-3 animate-spin" viewBox="0 0 24 24" fill="none">
<circle class="opacity-25" cx="12" cy="12" r="10" stroke="currentColor" stroke-width="4"></circle>
<path class="opacity-75" fill="currentColor" d="M4 12a8 8 0 018-8V0C5.373 0 0 5.373 0 12h4zm2 5.291A7.962 7.962 0 014 12H0c0 3.042 1.135 5.824 3 7.938l3-2.647z"></path>
</svg>
{{ retrying ? "Retrying..." : "Missing (Retry)" }}
</button>
<span v-else class="pdf-state-label" :class="{ 'bg-surface-accent-muted border-accent-300 text-accent-700': item.pdf_status === 'running' || item.pdf_status === 'queued' }">
<svg v-if="item.pdf_status === 'running'" class="mr-1 h-3 w-3 animate-spin text-accent-600" viewBox="0 0 24 24" fill="none">
<circle class="opacity-25" cx="12" cy="12" r="10" stroke="currentColor" stroke-width="4"></circle>
<path class="opacity-75" fill="currentColor" d="M4 12a8 8 0 018-8V0C5.373 0 0 5.373 0 12h4zm2 5.291A7.962 7.962 0 014 12H0c0 3.042 1.135 5.824 3 7.938l3-2.647z"></path>
</svg>
{{ pdfPendingLabel() }}
</span>
</td>
<td class="whitespace-nowrap">{{ item.year ?? "n/a" }}</td>
<td class="whitespace-nowrap">{{ item.citation_count }}</td>
<td>
<div class="status-badges-row">
<AppBadge :tone="item.is_new_in_latest_run ? 'info' : 'neutral'">
{{ item.is_new_in_latest_run ? "New" : "Seen" }}
</AppBadge>
<AppBadge :tone="item.is_read ? 'success' : 'warning'">
{{ item.is_read ? "Read" : "Unread" }}
</AppBadge>
</div>
</td>
<td class="whitespace-nowrap">{{ formatDate(item.first_seen_at) }}</td>
</tr>
</template>
<style scoped>
.favorite-star-button {
@apply inline-flex h-7 w-7 items-center justify-center rounded-full border text-sm leading-none transition focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-focus-ring focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset disabled:cursor-not-allowed disabled:opacity-50;
}
.favorite-star-on {
@apply border-warning-300 bg-warning-100 text-warning-700 hover:bg-warning-200;
}
.favorite-star-off {
@apply border-stroke-default bg-surface-card-muted text-ink-muted hover:border-stroke-interactive hover:text-ink-secondary;
}
.pdf-link-button {
@apply inline-flex items-center rounded-full border px-2 py-0.5 text-xs font-medium border-state-success-border bg-state-success-bg text-state-success-text shadow-sm transition hover:brightness-95 focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-focus-ring focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset;
}
.pdf-retry-button {
@apply inline-flex items-center rounded-full border px-2 py-0.5 text-xs font-medium border-state-warning-border bg-state-warning-bg text-state-warning-text transition hover:brightness-95 focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-focus-ring focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset disabled:cursor-not-allowed disabled:opacity-50;
}
.pdf-state-label {
@apply inline-flex items-center rounded-full border px-2 py-0.5 text-xs font-medium border-stroke-default bg-surface-card-muted text-secondary;
}
.status-badges-row {
@apply inline-flex items-center gap-1 whitespace-nowrap;
}
</style>

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// @vitest-environment happy-dom
import { describe, expect, it } from "vitest";
import { mount } from "@vue/test-utils";
import PublicationToolbar from "./PublicationToolbar.vue";
const defaultProps = {
mode: "all" as const,
selectedScholarFilter: "",
searchQuery: "",
favoriteOnly: false,
actionBusy: false,
loading: false,
scholars: [],
startRunDisabled: false,
startRunDisabledReason: null,
startRunButtonLabel: "Check now",
};
describe("PublicationToolbar", () => {
it("renders mode, scholar filter, and search inputs", () => {
const wrapper = mount(PublicationToolbar, { props: defaultProps });
expect(wrapper.text()).toContain("Status");
expect(wrapper.text()).toContain("Scholar");
expect(wrapper.text()).toContain("Search");
});
it("renders the start run button with provided label", () => {
const wrapper = mount(PublicationToolbar, { props: defaultProps });
expect(wrapper.text()).toContain("Check now");
});
it("disables start run button when startRunDisabled is true", () => {
const wrapper = mount(PublicationToolbar, {
props: { ...defaultProps, startRunDisabled: true, startRunDisabledReason: "Cooldown active" },
});
const buttons = wrapper.findAll("button");
const runButton = buttons.find((b) => b.text().includes("Check now"));
expect(runButton?.attributes("disabled")).toBeDefined();
});
it("emits start-run when start button is clicked", async () => {
const wrapper = mount(PublicationToolbar, { props: defaultProps });
const buttons = wrapper.findAll("button");
const runButton = buttons.find((b) => b.text().includes("Check now"));
await runButton?.trigger("click");
expect(wrapper.emitted("start-run")).toHaveLength(1);
});
it("emits favorite-only-changed when star filter is clicked", async () => {
const wrapper = mount(PublicationToolbar, { props: defaultProps });
await wrapper.find(".favorite-filter-button").trigger("click");
expect(wrapper.emitted("favorite-only-changed")).toHaveLength(1);
});
it("shows active star filter style when favoriteOnly is true", () => {
const wrapper = mount(PublicationToolbar, { props: { ...defaultProps, favoriteOnly: true } });
expect(wrapper.find(".favorite-filter-on").exists()).toBe(true);
});
it("shows inactive star filter style when favoriteOnly is false", () => {
const wrapper = mount(PublicationToolbar, { props: defaultProps });
expect(wrapper.find(".favorite-filter-off").exists()).toBe(true);
});
it("renders scholar options from props", () => {
const scholars = [
{ id: 1, scholar_id: "abc123", display_name: "Alice", profile_image_url: null, profile_image_source: "none" as const, is_enabled: true, baseline_completed: true, last_run_dt: null, last_run_status: null },
{ id: 2, scholar_id: "def456", display_name: "", profile_image_url: null, profile_image_source: "none" as const, is_enabled: true, baseline_completed: true, last_run_dt: null, last_run_status: null },
];
const wrapper = mount(PublicationToolbar, { props: { ...defaultProps, scholars } });
expect(wrapper.text()).toContain("Alice");
expect(wrapper.text()).toContain("def456");
});
it("shows clear button only when search query is non-empty", () => {
const empty = mount(PublicationToolbar, { props: defaultProps });
expect(empty.text()).not.toContain("Clear");
const withQuery = mount(PublicationToolbar, { props: { ...defaultProps, searchQuery: "test" } });
expect(withQuery.text()).toContain("Clear");
});
it("emits reset-search when clear button is clicked", async () => {
const wrapper = mount(PublicationToolbar, { props: { ...defaultProps, searchQuery: "test" } });
const clearButton = wrapper.findAll("button").find((b) => b.text().includes("Clear"));
await clearButton?.trigger("click");
expect(wrapper.emitted("reset-search")).toHaveLength(1);
});
});

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<script setup lang="ts">
import AppButton from "@/components/ui/AppButton.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
import AppInput from "@/components/ui/AppInput.vue";
import AppRefreshButton from "@/components/ui/AppRefreshButton.vue";
import AppSelect from "@/components/ui/AppSelect.vue";
import type { PublicationMode } from "@/features/publications";
import type { ScholarProfile } from "@/features/scholars";
defineProps<{
mode: PublicationMode;
selectedScholarFilter: string;
searchQuery: string;
favoriteOnly: boolean;
actionBusy: boolean;
loading: boolean;
scholars: ScholarProfile[];
startRunDisabled: boolean;
startRunDisabledReason: string | null;
startRunButtonLabel: string;
}>();
const emit = defineEmits<{
(e: "update:mode", value: PublicationMode): void;
(e: "update:selectedScholarFilter", value: string): void;
(e: "update:searchQuery", value: string): void;
(e: "mode-changed"): void;
(e: "scholar-filter-changed"): void;
(e: "favorite-only-changed"): void;
(e: "reset-search"): void;
(e: "start-run"): void;
(e: "refresh"): void;
}>();
function scholarLabel(item: ScholarProfile): string {
return item.display_name || item.scholar_id;
}
</script>
<template>
<div class="grid gap-3 xl:grid-cols-[minmax(0,13rem)_minmax(0,18rem)_minmax(0,1fr)_auto] xl:items-end">
<div class="grid gap-1 text-xs text-secondary">
<div class="flex items-center gap-1">
<span>Status</span>
<AppHelpHint text="All shows full history. Unread and New narrow the dataset before search." />
</div>
<AppSelect
:model-value="mode"
:disabled="actionBusy"
@update:model-value="emit('update:mode', $event as PublicationMode)"
@change="emit('mode-changed')"
>
<option value="all">All records</option>
<option value="unread">Unread</option>
<option value="latest">New (latest run)</option>
</AppSelect>
</div>
<label class="grid gap-1 text-xs text-secondary" for="publications-scholar-filter">
<span class="inline-flex items-center gap-1">
Scholar
<AppHelpHint text="Filter to one tracked scholar profile. Filter is synced to URL query." />
</span>
<AppSelect
id="publications-scholar-filter"
:model-value="selectedScholarFilter"
:disabled="actionBusy"
@update:model-value="emit('update:selectedScholarFilter', $event as string)"
@change="emit('scholar-filter-changed')"
>
<option value="">All scholars</option>
<option v-for="scholar in scholars" :key="scholar.id" :value="String(scholar.id)">
{{ scholarLabel(scholar) }}
</option>
</AppSelect>
</label>
<label class="grid gap-1 text-xs text-secondary" for="publications-search-input">
<span class="inline-flex items-center gap-1">
Search
<AppHelpHint text="Searches title, scholar name, and venue." />
</span>
<div class="flex min-w-0 items-center gap-2">
<AppInput
id="publications-search-input"
:model-value="searchQuery"
placeholder="Search title, scholar, venue, year"
:disabled="loading"
@update:model-value="emit('update:searchQuery', $event as string)"
/>
<AppButton
v-if="searchQuery.trim().length > 0"
variant="secondary"
class="shrink-0"
:disabled="loading"
@click="emit('reset-search')"
>
Clear
</AppButton>
</div>
</label>
<div class="flex flex-wrap items-end justify-end gap-2">
<button
type="button"
class="favorite-filter-button"
:class="favoriteOnly ? 'favorite-filter-on' : 'favorite-filter-off'"
:disabled="actionBusy"
:title="favoriteOnly ? 'Favorites-only filter is active' : 'Show only favorites'"
:aria-pressed="favoriteOnly"
:aria-label="favoriteOnly ? 'Disable favorites-only filter' : 'Enable favorites-only filter'"
@click="emit('favorite-only-changed')"
>
<span aria-hidden="true">{{ favoriteOnly ? "★" : "☆" }}</span>
</button>
<AppButton
variant="secondary"
:disabled="startRunDisabled"
:title="startRunDisabledReason || undefined"
@click="emit('start-run')"
>
{{ startRunButtonLabel }}
</AppButton>
<AppRefreshButton
variant="ghost"
:disabled="loading"
:loading="loading"
title="Refresh publications"
loading-title="Refreshing publications"
@click="emit('refresh')"
/>
</div>
</div>
</template>
<style scoped>
.favorite-filter-button {
@apply inline-flex min-h-10 h-10 w-10 items-center justify-center rounded-full border text-base leading-none transition focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-focus-ring focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset disabled:cursor-not-allowed disabled:opacity-50;
}
.favorite-filter-on {
@apply border-warning-300 bg-warning-100 text-warning-700 hover:bg-warning-200;
}
.favorite-filter-off {
@apply border-stroke-default bg-surface-card-muted text-ink-muted hover:border-stroke-interactive hover:text-ink-secondary;
}
</style>

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import { describe, expect, it, vi, beforeEach } from "vitest";
import { createPinia, setActivePinia } from "pinia";
vi.mock("vue-router", () => ({
useRoute: vi.fn(() => ({ query: {} })),
useRouter: vi.fn(() => ({ replace: vi.fn() })),
}));
vi.mock("@/features/publications", async (importOriginal) => {
const original = (await importOriginal()) as Record<string, unknown>;
return {
...original,
listPublications: vi.fn(),
};
});
vi.mock("@/features/scholars", () => ({
listScholars: vi.fn(),
}));
import { listPublications } from "@/features/publications";
import { listScholars } from "@/features/scholars";
import { usePublicationData } from "./usePublicationData";
const mockedListPublications = vi.mocked(listPublications);
const mockedListScholars = vi.mocked(listScholars);
describe("usePublicationData", () => {
beforeEach(() => {
setActivePinia(createPinia());
mockedListPublications.mockReset();
mockedListScholars.mockReset();
});
it("initializes with default filter values", () => {
const data = usePublicationData();
expect(data.mode.value).toBe("all");
expect(data.favoriteOnly.value).toBe(false);
expect(data.searchQuery.value).toBe("");
expect(data.selectedScholarFilter.value).toBe("");
expect(data.loading.value).toBe(true);
});
it("loadScholarFilters calls listScholars", async () => {
mockedListScholars.mockResolvedValueOnce([
{ id: 1, scholar_id: "abc", display_name: "Test", profile_image_url: null, profile_image_source: "none" as const, is_enabled: true, baseline_completed: true, last_run_dt: null, last_run_status: null },
]);
const data = usePublicationData();
await data.loadScholarFilters();
expect(mockedListScholars).toHaveBeenCalled();
expect(data.scholars.value).toHaveLength(1);
});
it("loadPublications calls listPublications with current filters", async () => {
mockedListPublications.mockResolvedValueOnce({
publications: [],
mode: "all" as const,
favorite_only: false,
selected_scholar_profile_id: null,
unread_count: 0,
favorites_count: 0,
latest_count: 0,
new_count: 0,
total_count: 0,
page: 1,
page_size: 25,
snapshot: "",
has_next: false,
has_prev: false,
});
const data = usePublicationData();
await data.loadPublications();
expect(mockedListPublications).toHaveBeenCalled();
});
it("resetPageAndSnapshot resets page to 1", () => {
const data = usePublicationData();
data.currentPage.value = 5;
data.resetPageAndSnapshot();
expect(data.currentPage.value).toBe(1);
});
it("toggleSort reverses direction for same key", async () => {
mockedListPublications.mockResolvedValue({
publications: [],
mode: "all" as const,
favorite_only: false,
selected_scholar_profile_id: null,
unread_count: 0,
favorites_count: 0,
latest_count: 0,
new_count: 0,
total_count: 0,
page: 1,
page_size: 25,
snapshot: "",
has_next: false,
has_prev: false,
});
const data = usePublicationData();
const initialDirection = data.sortDirection.value;
await data.toggleSort(data.sortKey.value);
expect(data.sortDirection.value).toBe(initialDirection === "asc" ? "desc" : "asc");
});
it("sortMarker returns arrow indicators", () => {
const data = usePublicationData();
expect(data.sortMarker(data.sortKey.value)).toMatch(/[↑↓]/);
expect(data.sortMarker("year" as never)).toBe("↕");
});
it("computed pagination properties work correctly", () => {
const data = usePublicationData();
expect(data.hasPrevPage.value).toBe(false);
expect(data.totalPages.value).toBe(1);
expect(data.totalCount.value).toBe(0);
});
});

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import { computed, ref, watch } from "vue";
import { useRoute, useRouter } from "vue-router";
import {
listPublications,
type PublicationItem,
type PublicationMode,
type PublicationsResult,
} from "@/features/publications";
import { listScholars, type ScholarProfile } from "@/features/scholars";
import { ApiRequestError } from "@/lib/api/errors";
import { useRunStatusStore } from "@/stores/run_status";
export type PublicationSortKey =
| "title"
| "scholar"
| "year"
| "citations"
| "first_seen"
| "pdf_status";
export function publicationKey(item: PublicationItem): string {
return `${item.scholar_profile_id}:${item.publication_id}`;
}
export function usePublicationData() {
const loading = ref(true);
const mode = ref<PublicationMode>("all");
const favoriteOnly = ref(false);
const selectedScholarFilter = ref("");
const searchQuery = ref("");
const sortKey = ref<PublicationSortKey>("first_seen");
const sortDirection = ref<"asc" | "desc">("desc");
const currentPage = ref(1);
const pageSize = ref("50");
const publicationSnapshot = ref<string | null>(null);
const scholars = ref<ScholarProfile[]>([]);
const listState = ref<PublicationsResult | null>(null);
const errorMessage = ref<string | null>(null);
const errorRequestId = ref<string | null>(null);
const successMessage = ref<string | null>(null);
const route = useRoute();
const router = useRouter();
const textCollator = new Intl.Collator(undefined, { sensitivity: "base", numeric: true });
const runStatus = useRunStatusStore();
// --- Route sync ---
function normalizeScholarFilterQuery(value: unknown): string {
if (Array.isArray(value)) return normalizeScholarFilterQuery(value[0]);
if (typeof value !== "string") return "";
const parsed = Number(value);
return Number.isInteger(parsed) && parsed > 0 ? String(parsed) : "";
}
function normalizeFavoriteOnlyQuery(value: unknown): boolean {
if (Array.isArray(value)) return normalizeFavoriteOnlyQuery(value[0]);
if (typeof value !== "string") return false;
const normalized = value.trim().toLowerCase();
return normalized === "1" || normalized === "true" || normalized === "yes";
}
function normalizePageQuery(value: unknown): number {
if (Array.isArray(value)) return normalizePageQuery(value[0]);
if (typeof value !== "string") return 1;
const parsed = Number(value);
return Number.isInteger(parsed) && parsed > 0 ? parsed : 1;
}
function syncFiltersFromRoute(): boolean {
let changed = false;
const nextScholar = normalizeScholarFilterQuery(route.query.scholar);
const nextFavoriteOnly = normalizeFavoriteOnlyQuery(route.query.favorite);
const nextPage = normalizePageQuery(route.query.page);
if (selectedScholarFilter.value !== nextScholar) { selectedScholarFilter.value = nextScholar; changed = true; }
if (favoriteOnly.value !== nextFavoriteOnly) { favoriteOnly.value = nextFavoriteOnly; changed = true; }
if (currentPage.value !== nextPage) { currentPage.value = nextPage; changed = true; }
return changed;
}
async function syncFiltersToRoute(): Promise<void> {
const nextScholar = selectedScholarFilter.value.trim();
const currentScholar = normalizeScholarFilterQuery(route.query.scholar);
const currentFavoriteOnly = normalizeFavoriteOnlyQuery(route.query.favorite);
const currentPageQuery = normalizePageQuery(route.query.page);
if (
nextScholar === currentScholar
&& favoriteOnly.value === currentFavoriteOnly
&& currentPage.value === currentPageQuery
) {
return;
}
await router.replace({
query: {
...route.query,
scholar: nextScholar || undefined,
favorite: favoriteOnly.value ? "1" : undefined,
page: currentPage.value > 1 ? String(currentPage.value) : undefined,
},
});
}
// --- Sorting helpers ---
function publicationSortValue(item: PublicationItem, key: PublicationSortKey): number | string {
if (key === "title") return item.title;
if (key === "scholar") return item.scholar_label;
if (key === "year") return item.year ?? -1;
if (key === "citations") return item.citation_count;
if (key === "pdf_status") {
if (item.pdf_url || item.pdf_status === "resolved") return 4;
if (item.pdf_status === "running") return 3;
if (item.pdf_status === "queued") return 2;
if (item.pdf_status === "failed") return 0;
return 1;
}
const timestamp = Date.parse(item.first_seen_at);
return Number.isNaN(timestamp) ? 0 : timestamp;
}
// --- Computed ---
const selectedScholarName = computed(() => {
const selectedId = Number(selectedScholarFilter.value);
if (!Number.isInteger(selectedId) || selectedId <= 0) return "all scholars";
const profile = scholars.value.find((item) => item.id === selectedId);
return profile ? (profile.display_name || profile.scholar_id) : "the selected scholar";
});
const filteredPublications = computed(() => {
let stream = [...runStatus.livePublications];
if (favoriteOnly.value) stream = stream.filter((p) => p.is_favorite);
if (mode.value === "unread") stream = stream.filter((p) => !p.is_read);
const selectedScholarId = Number(selectedScholarFilter.value);
if (Number.isInteger(selectedScholarId) && selectedScholarId > 0) {
stream = stream.filter((p) => p.scholar_profile_id === selectedScholarId);
}
const base = listState.value?.publications ?? [];
const merged = [...stream, ...base];
const seenKeys = new Set<string>();
const deduped: typeof base = [];
for (const item of merged) {
const key = publicationKey(item);
if (!seenKeys.has(key)) { seenKeys.add(key); deduped.push(item); }
}
return deduped;
});
const sortedPublications = computed(() => {
const direction = sortDirection.value === "asc" ? 1 : -1;
return [...filteredPublications.value].sort((left, right) => {
const leftValue = publicationSortValue(left, sortKey.value);
const rightValue = publicationSortValue(right, sortKey.value);
let comparison = 0;
if (typeof leftValue === "string" && typeof rightValue === "string") {
comparison = textCollator.compare(leftValue, rightValue);
} else {
comparison = Number(leftValue) - Number(rightValue);
}
if (comparison !== 0) return comparison * direction;
return right.publication_id - left.publication_id;
});
});
const visibleUnreadKeys = computed(() => {
const keys = new Set<string>();
for (const item of sortedPublications.value) {
if (!item.is_read) keys.add(publicationKey(item));
}
return keys;
});
const pageSizeValue = computed(() => {
const parsed = Number(pageSize.value);
if (!Number.isInteger(parsed)) return 50;
return Math.max(10, Math.min(200, parsed));
});
const hasNextPage = computed(() => Boolean(listState.value?.has_next));
const hasPrevPage = computed(() => Boolean(listState.value?.has_prev));
const totalPages = computed(() => {
if (!listState.value) return 1;
return Math.max(1, Math.ceil(listState.value.total_count / Math.max(listState.value.page_size, 1)));
});
const totalCount = computed(() => listState.value?.total_count ?? 0);
const visibleCount = computed(() => sortedPublications.value.length);
const visibleUnreadCount = computed(() => visibleUnreadKeys.value.size);
const visibleFavoriteCount = computed(
() => sortedPublications.value.filter((item) => item.is_favorite).length,
);
// --- Data loading ---
async function loadScholarFilters(): Promise<void> {
try { scholars.value = await listScholars(); } catch { scholars.value = []; }
}
function selectedScholarId(): number | undefined {
const parsed = Number(selectedScholarFilter.value);
return Number.isInteger(parsed) && parsed > 0 ? parsed : undefined;
}
async function loadPublications(): Promise<void> {
loading.value = true;
errorMessage.value = null;
errorRequestId.value = null;
try {
listState.value = await listPublications({
mode: mode.value,
favoriteOnly: favoriteOnly.value,
scholarProfileId: selectedScholarId(),
search: searchQuery.value.trim() || undefined,
sortBy: sortKey.value,
sortDir: sortDirection.value,
page: currentPage.value,
pageSize: pageSizeValue.value,
snapshot: publicationSnapshot.value ?? undefined,
});
publicationSnapshot.value = listState.value.snapshot;
currentPage.value = listState.value.page;
pageSize.value = String(listState.value.page_size);
} catch (error) {
listState.value = null;
if (error instanceof ApiRequestError) {
errorMessage.value = error.message;
errorRequestId.value = error.requestId;
} else {
errorMessage.value = "Unable to load publications.";
}
} finally {
loading.value = false;
}
}
function resetPageAndSnapshot(): void {
currentPage.value = 1;
publicationSnapshot.value = null;
}
async function toggleSort(nextKey: PublicationSortKey): Promise<void> {
if (sortKey.value === nextKey) {
sortDirection.value = sortDirection.value === "asc" ? "desc" : "asc";
} else {
sortKey.value = nextKey;
sortDirection.value = nextKey === "first_seen" || nextKey === "pdf_status" ? "desc" : "asc";
}
resetPageAndSnapshot();
await loadPublications();
}
function sortMarker(key: PublicationSortKey): string {
if (sortKey.value !== key) return "↕";
return sortDirection.value === "asc" ? "↑" : "↓";
}
function replacePublication(updated: PublicationItem): void {
if (!listState.value) return;
listState.value.publications = listState.value.publications.map((item) =>
publicationKey(item) !== publicationKey(updated) ? item : updated,
);
}
// --- Search debounce watcher setup ---
let searchDebounceTimer: ReturnType<typeof setTimeout> | null = null;
watch(searchQuery, () => {
if (searchDebounceTimer !== null) clearTimeout(searchDebounceTimer);
searchDebounceTimer = setTimeout(() => {
resetPageAndSnapshot();
void loadPublications();
}, 300);
});
// --- Run-triggered refresh watcher ---
watch(
() => runStatus.latestRun,
async (nextRun, previousRun) => {
const nextRunId = nextRun && (nextRun.status === "running" || nextRun.status === "resolving") ? nextRun.id : null;
const previousRunId = previousRun && (previousRun.status === "running" || previousRun.status === "resolving") ? previousRun.id : null;
if (nextRunId === null || nextRunId === previousRunId) return;
resetPageAndSnapshot();
await loadPublications();
},
);
// --- Route watcher ---
watch(
() => [route.query.scholar, route.query.favorite, route.query.page],
async () => {
const previousScholar = selectedScholarFilter.value;
const previousFavorite = favoriteOnly.value;
const changed = syncFiltersFromRoute();
if (!changed) return;
if (selectedScholarFilter.value !== previousScholar || favoriteOnly.value !== previousFavorite) {
publicationSnapshot.value = null;
}
await loadPublications();
},
);
return {
loading,
mode,
favoriteOnly,
selectedScholarFilter,
searchQuery,
sortKey,
sortDirection,
currentPage,
pageSize,
scholars,
listState,
errorMessage,
errorRequestId,
successMessage,
selectedScholarName,
sortedPublications,
visibleUnreadKeys,
pageSizeValue,
hasNextPage,
hasPrevPage,
totalPages,
totalCount,
visibleCount,
visibleUnreadCount,
visibleFavoriteCount,
loadScholarFilters,
loadPublications,
resetPageAndSnapshot,
toggleSort,
sortMarker,
replacePublication,
syncFiltersFromRoute,
syncFiltersToRoute,
};
}

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// @vitest-environment happy-dom
import { describe, expect, it } from "vitest";
import { mount } from "@vue/test-utils";
import ScholarBatchAdd from "./ScholarBatchAdd.vue";
const defaultProps = { saving: false, loading: false };
describe("ScholarBatchAdd", () => {
it("renders the heading and input", () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
expect(wrapper.text()).toContain("Add Scholar Profiles");
expect(wrapper.find("textarea").exists()).toBe(true);
});
it("shows parsed ID count as 0 for empty input", () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
expect(wrapper.text()).toContain("Parsed IDs:");
});
it("parses bare scholar IDs from textarea input", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
await wrapper.find("textarea").setValue("A-UbBTPM15wL");
expect(wrapper.text()).toContain("1");
});
it("parses scholar IDs from Google Scholar URLs", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
await wrapper.find("textarea").setValue(
"https://scholar.google.com/citations?hl=en&user=A-UbBTPM15wL",
);
expect(wrapper.text()).toContain("1");
});
it("deduplicates IDs from mixed input", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
await wrapper.find("textarea").setValue(
"A-UbBTPM15wL\nhttps://scholar.google.com/citations?user=A-UbBTPM15wL",
);
expect(wrapper.text()).toContain("1");
});
it("parses multiple IDs separated by commas", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
await wrapper.find("textarea").setValue("A-UbBTPM15wL, B-UbBTPM15wL");
expect(wrapper.text()).toContain("2");
});
it("emits add-scholars with parsed IDs on submit", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
await wrapper.find("textarea").setValue("A-UbBTPM15wL");
await wrapper.find("form").trigger("submit");
const emitted = wrapper.emitted("add-scholars");
expect(emitted).toHaveLength(1);
expect(emitted![0][0]).toEqual(["A-UbBTPM15wL"]);
});
it("clears textarea after successful submit", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
const textarea = wrapper.find("textarea");
await textarea.setValue("A-UbBTPM15wL");
await wrapper.find("form").trigger("submit");
expect((textarea.element as HTMLTextAreaElement).value).toBe("");
});
it("does not emit when input contains no valid IDs", async () => {
const wrapper = mount(ScholarBatchAdd, { props: defaultProps });
await wrapper.find("textarea").setValue("not-a-valid-id");
await wrapper.find("form").trigger("submit");
expect(wrapper.emitted("add-scholars")).toBeUndefined();
});
it("shows Adding... label when saving prop is true", () => {
const wrapper = mount(ScholarBatchAdd, { props: { ...defaultProps, saving: true } });
expect(wrapper.text()).toContain("Adding...");
});
});

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<script setup lang="ts">
import { computed, ref } from "vue";
import AppButton from "@/components/ui/AppButton.vue";
import AppCard from "@/components/ui/AppCard.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
defineProps<{
saving: boolean;
loading: boolean;
}>();
const emit = defineEmits<{
(e: "add-scholars", ids: string[]): void;
}>();
const scholarBatchInput = ref("");
const SCHOLAR_ID_PATTERN = /^[a-zA-Z0-9_-]{12}$/;
const URL_USER_PARAM_PATTERN = /(?:\?|&)user=([a-zA-Z0-9_-]{12})(?:&|#|$)/i;
function parseScholarIds(raw: string): string[] {
const ordered: string[] = [];
const seen = new Set<string>();
const tokens = raw.split(/[\s,;]+/).map((v) => v.trim()).filter((v) => v.length > 0);
for (const token of tokens) {
let candidate: string | null = null;
if (SCHOLAR_ID_PATTERN.test(token)) candidate = token;
if (!candidate) {
const directParamMatch = token.match(URL_USER_PARAM_PATTERN);
if (directParamMatch) candidate = directParamMatch[1];
}
if (!candidate && token.includes("scholar.google")) {
try {
const parsed = new URL(token);
const userParam = parsed.searchParams.get("user");
if (userParam && SCHOLAR_ID_PATTERN.test(userParam)) candidate = userParam;
} catch (_error) { /* Ignore non-URL tokens. */ }
}
if (!candidate || seen.has(candidate)) continue;
seen.add(candidate);
ordered.push(candidate);
}
return ordered;
}
const parsedBatchCount = computed(() => parseScholarIds(scholarBatchInput.value).length);
function onSubmit(): void {
const ids = parseScholarIds(scholarBatchInput.value);
if (ids.length > 0) {
emit("add-scholars", ids);
scholarBatchInput.value = "";
}
}
</script>
<template>
<AppCard class="space-y-4 xl:flex xl:min-h-0 xl:flex-col">
<div class="space-y-1">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">Add Scholar Profiles</h2>
<AppHelpHint text="A scholar profile is a Google Scholar author page that Scholarr will monitor for publication changes." />
</div>
<p class="text-sm text-secondary">Paste one or more Scholar IDs or profile URLs and add them in one action.</p>
</div>
<form class="grid gap-3" @submit.prevent="onSubmit">
<label class="grid gap-2 text-sm font-medium text-ink-secondary" for="scholar-batch-input">
<span>Scholar IDs or profile URLs</span>
<textarea
id="scholar-batch-input"
v-model="scholarBatchInput"
rows="5"
placeholder="A-UbBTPM15wL&#10;https://scholar.google.com/citations?hl=en&user=A-UbBTPM15wL"
class="w-full rounded-lg border border-stroke-interactive bg-surface-input px-3 py-2 text-sm text-ink-primary outline-none ring-focus-ring transition placeholder:text-ink-muted focus-visible:ring-2 focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset disabled:cursor-not-allowed disabled:opacity-60"
/>
</label>
<div class="flex flex-wrap items-center justify-between gap-2">
<p class="text-xs text-secondary">
Parsed IDs: <strong class="text-ink-primary">{{ parsedBatchCount }}</strong>
</p>
<AppButton type="submit" :disabled="saving || loading">
{{ saving ? "Adding..." : "Add scholars" }}
</AppButton>
</div>
</form>
</AppCard>
</template>

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// @vitest-environment happy-dom
import { describe, expect, it } from "vitest";
import { mount } from "@vue/test-utils";
import ScholarNameSearch from "./ScholarNameSearch.vue";
const defaultProps = {
trackedScholarIds: new Set<string>(),
addingCandidateScholarId: null,
};
describe("ScholarNameSearch", () => {
it("renders the search heading", () => {
const wrapper = mount(ScholarNameSearch, {
props: defaultProps,
global: { stubs: { ScholarAvatar: true } },
});
expect(wrapper.text()).toContain("Search by Name");
});
it("shows WIP badge indicating the feature is incomplete", () => {
const wrapper = mount(ScholarNameSearch, {
props: defaultProps,
global: { stubs: { ScholarAvatar: true } },
});
expect(wrapper.text()).toContain("WIP");
});
it("renders the search input", () => {
const wrapper = mount(ScholarNameSearch, {
props: defaultProps,
global: { stubs: { ScholarAvatar: true } },
});
expect(wrapper.find("form").exists()).toBe(true);
});
it("shows warning about Google Scholar login challenges", () => {
const wrapper = mount(ScholarNameSearch, {
props: defaultProps,
global: { stubs: { ScholarAvatar: true } },
});
expect(wrapper.text()).toContain("login challenge");
});
});

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<script setup lang="ts">
import { computed, ref } from "vue";
import AsyncStateGate from "@/components/patterns/AsyncStateGate.vue";
import RequestStateAlerts from "@/components/patterns/RequestStateAlerts.vue";
import AppAlert from "@/components/ui/AppAlert.vue";
import AppBadge from "@/components/ui/AppBadge.vue";
import AppButton from "@/components/ui/AppButton.vue";
import AppCard from "@/components/ui/AppCard.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
import AppInput from "@/components/ui/AppInput.vue";
import ScholarAvatar from "@/features/scholars/components/ScholarAvatar.vue";
import type { ScholarSearchCandidate, ScholarSearchResult } from "@/features/scholars";
defineProps<{
trackedScholarIds: Set<string>;
addingCandidateScholarId: string | null;
}>();
const emit = defineEmits<{
(e: "add-candidate", candidate: ScholarSearchCandidate): void;
}>();
const nameSearchWip = true;
const searchingByName = ref(false);
const searchQuery = ref("");
const searchResult = ref<ScholarSearchResult | null>(null);
const searchErrorMessage = ref<string | null>(null);
const searchErrorRequestId = ref<string | null>(null);
const searchHasRun = computed(() => searchResult.value !== null);
const searchIsDegraded = computed(() => {
if (!searchResult.value) return false;
return searchResult.value.state === "blocked_or_captcha" || searchResult.value.state === "network_error";
});
const searchStateTone = computed(() => {
const result = searchResult.value;
if (!result) return "neutral" as const;
if (result.state === "ok") return "success" as const;
if (result.state === "blocked_or_captcha" || result.state === "network_error") return "warning" as const;
return "neutral" as const;
});
const emptySearchCandidates = computed(() => {
const result = searchResult.value;
if (!result) return false;
return result.candidates.length === 0;
});
</script>
<template>
<AppCard class="relative space-y-4 select-none xl:flex xl:min-h-0 xl:flex-col xl:overflow-hidden">
<div class="flex flex-wrap items-start justify-between gap-2">
<div class="space-y-1">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">Search by Name</h2>
<AppHelpHint text="Google Scholar now challenges this endpoint with account login and anti-bot checks, so this workflow stays disabled." />
</div>
<p class="text-sm text-secondary">
This helper remains paused because Google Scholar currently requires account login for reliable name search access.
</p>
</div>
<AppHelpHint text="Name search is kept as WIP. Use direct Scholar ID or profile URL adds for production tracking.">
<template #trigger>
<AppBadge tone="warning">WIP</AppBadge>
</template>
</AppHelpHint>
</div>
<form class="pointer-events-none flex flex-wrap items-center gap-2 opacity-60">
<div class="min-w-0 flex-1">
<AppInput
id="scholar-search-name"
v-model="searchQuery"
placeholder="e.g. Geoffrey Hinton"
:disabled="nameSearchWip"
/>
</div>
<AppButton type="button" :disabled="nameSearchWip">
Search
</AppButton>
</form>
<p class="text-xs text-secondary">
Direct Scholar ID/URL adds above are the supported path until name search can run without login challenges.
</p>
<div class="min-h-0 xl:flex-1 xl:overflow-y-auto xl:pr-1">
<RequestStateAlerts
:error-message="searchErrorMessage"
:error-request-id="searchErrorRequestId"
error-title="Search request failed"
/>
<AsyncStateGate :loading="searchingByName" :loading-lines="4" :show-empty="false">
<template v-if="searchResult">
<div class="flex flex-wrap items-center justify-between gap-2">
<p class="text-sm text-secondary">
{{ searchResult.candidates.length }} candidate{{ searchResult.candidates.length === 1 ? "" : "s" }}
for <strong class="text-ink-primary">{{ searchResult.query }}</strong>
</p>
<AppBadge :tone="searchStateTone">{{ searchResult.state }}</AppBadge>
</div>
<p v-if="searchResult.state !== 'ok' || searchResult.warnings.length > 0" class="text-xs text-secondary">
<span>State reason: <code>{{ searchResult.state_reason }}</code></span>
<span v-if="searchResult.action_hint">. {{ searchResult.action_hint }}</span>
<span v-if="searchResult.warnings.length > 0">. Warnings: {{ searchResult.warnings.join(", ") }}</span>
</p>
<AppAlert v-if="searchIsDegraded" tone="warning">
<template #title>Name search is degraded</template>
<p>This endpoint throttles aggressively to avoid blocks. Use Scholar URL/ID adds for dependable tracking.</p>
</AppAlert>
<AsyncStateGate
:loading="false"
:show-empty="true"
:empty="emptySearchCandidates"
empty-title="No scholar matches returned"
empty-body="Try another query later or add directly by Scholar URL/ID."
>
<ul class="grid gap-3">
<li
v-for="candidate in searchResult.candidates"
:key="candidate.scholar_id"
class="rounded-xl border border-stroke-default bg-surface-card-muted/70 p-3"
>
<div class="flex items-start gap-3">
<ScholarAvatar
size="sm"
:label="candidate.display_name"
:scholar-id="candidate.scholar_id"
:image-url="candidate.profile_image_url"
/>
<div class="min-w-0 flex-1 space-y-1">
<div class="flex flex-wrap items-center gap-2">
<strong class="text-sm text-ink-primary">{{ candidate.display_name }}</strong>
<code class="text-xs text-secondary">{{ candidate.scholar_id }}</code>
<AppBadge v-if="trackedScholarIds.has(candidate.scholar_id)" tone="success">Tracked</AppBadge>
</div>
<p class="truncate text-xs text-secondary">{{ candidate.affiliation || "No affiliation provided" }}</p>
<div class="flex flex-wrap items-center gap-2 text-xs text-secondary">
<span v-if="candidate.email_domain">Email: {{ candidate.email_domain }}</span>
<span v-if="candidate.cited_by_count !== null">Cited by: {{ candidate.cited_by_count }}</span>
</div>
</div>
<div class="grid shrink-0 gap-2">
<AppButton
:disabled="trackedScholarIds.has(candidate.scholar_id) || addingCandidateScholarId === candidate.scholar_id"
@click="emit('add-candidate', candidate)"
>
{{ addingCandidateScholarId === candidate.scholar_id ? "Adding..." : "Add" }}
</AppButton>
<a :href="candidate.profile_url" target="_blank" rel="noreferrer" class="link-inline text-xs text-center">
Open profile
</a>
</div>
</div>
</li>
</ul>
</AsyncStateGate>
</template>
<p v-else-if="!searchErrorMessage && !searchHasRun" class="text-sm text-secondary">
Name search remains disabled while login-gated responses are unresolved.
</p>
</AsyncStateGate>
</div>
</AppCard>
</template>

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// @vitest-environment happy-dom
import { describe, expect, it } from "vitest";
import { mount } from "@vue/test-utils";
import ScholarSettingsModal from "./ScholarSettingsModal.vue";
import type { ScholarProfile } from "@/features/scholars";
function buildScholar(overrides: Partial<ScholarProfile> = {}): ScholarProfile {
return {
id: 1,
scholar_id: "abcDEF123456",
display_name: "Dr. Test Scholar",
profile_image_url: null,
profile_image_source: "none" as const,
is_enabled: true,
baseline_completed: true,
last_run_dt: null,
last_run_status: null,
...overrides,
};
}
const defaultProps = {
scholar: buildScholar(),
imageUrlDraft: "",
imageBusy: false,
imageSaving: false,
imageUploading: false,
saving: false,
};
describe("ScholarSettingsModal", () => {
it("renders scholar name and ID when scholar is provided", () => {
const wrapper = mount(ScholarSettingsModal, {
props: defaultProps,
global: { stubs: { AppModal: false, RouterLink: true, ScholarAvatar: true } },
});
expect(wrapper.text()).toContain("Dr. Test Scholar");
expect(wrapper.text()).toContain("abcDEF123456");
});
it("renders nothing when scholar is null", () => {
const wrapper = mount(ScholarSettingsModal, {
props: { ...defaultProps, scholar: null },
global: { stubs: { AppModal: false, RouterLink: true, ScholarAvatar: true } },
});
expect(wrapper.text()).not.toContain("Dr. Test Scholar");
});
it("emits close when close event fires", async () => {
const wrapper = mount(ScholarSettingsModal, {
props: defaultProps,
global: { stubs: { RouterLink: true, ScholarAvatar: true } },
});
const modal = wrapper.findComponent({ name: "AppModal" });
if (modal.exists()) {
modal.vm.$emit("close");
expect(wrapper.emitted("close")).toHaveLength(1);
}
});
it("emits delete when delete button is clicked", async () => {
const wrapper = mount(ScholarSettingsModal, {
props: defaultProps,
global: { stubs: { RouterLink: true, ScholarAvatar: true } },
});
const deleteButton = wrapper.findAll("button").find((b) => b.text().includes("Delete"));
if (deleteButton) {
await deleteButton.trigger("click");
expect(wrapper.emitted("delete")).toHaveLength(1);
}
});
it("emits toggle when enable/disable button is clicked", async () => {
const wrapper = mount(ScholarSettingsModal, {
props: defaultProps,
global: { stubs: { RouterLink: true, ScholarAvatar: true } },
});
const toggleButton = wrapper.findAll("button").find((b) => b.text().includes("Disable"));
if (toggleButton) {
await toggleButton.trigger("click");
expect(wrapper.emitted("toggle")).toHaveLength(1);
}
});
it("shows Enable button for disabled scholars", () => {
const wrapper = mount(ScholarSettingsModal, {
props: { ...defaultProps, scholar: buildScholar({ is_enabled: false }) },
global: { stubs: { RouterLink: true, ScholarAvatar: true } },
});
expect(wrapper.text()).toContain("Enable");
});
});

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<script setup lang="ts">
import AppButton from "@/components/ui/AppButton.vue";
import AppInput from "@/components/ui/AppInput.vue";
import AppModal from "@/components/ui/AppModal.vue";
import ScholarAvatar from "@/features/scholars/components/ScholarAvatar.vue";
import type { ScholarProfile } from "@/features/scholars";
const props = defineProps<{
scholar: ScholarProfile | null;
imageUrlDraft: string;
imageBusy: boolean;
imageSaving: boolean;
imageUploading: boolean;
saving: boolean;
}>();
const emit = defineEmits<{
(e: "close"): void;
(e: "update:image-url-draft", value: string): void;
(e: "save-image-url"): void;
(e: "upload-image", event: Event): void;
(e: "reset-image"): void;
(e: "toggle"): void;
(e: "delete"): void;
}>();
function scholarLabel(profile: ScholarProfile): string {
return profile.display_name || profile.scholar_id;
}
function scholarProfileUrl(scholarId: string): string {
return `https://scholar.google.com/citations?hl=en&user=${encodeURIComponent(scholarId)}`;
}
function scholarPublicationsRoute(profile: ScholarProfile): { name: string; query: { scholar: string } } {
return { name: "publications", query: { scholar: String(profile.id) } };
}
</script>
<template>
<AppModal :open="scholar !== null" title="Scholar settings" @close="emit('close')">
<div v-if="scholar" class="grid gap-4">
<div class="flex items-start gap-3">
<ScholarAvatar
:label="scholar.display_name"
:scholar-id="scholar.scholar_id"
:image-url="scholar.profile_image_url"
/>
<div class="min-w-0 space-y-1">
<p class="truncate text-sm font-semibold text-ink-primary">{{ scholarLabel(scholar) }}</p>
<p class="text-xs text-secondary">ID: <code>{{ scholar.scholar_id }}</code></p>
<div class="flex flex-wrap items-center gap-3">
<RouterLink :to="scholarPublicationsRoute(scholar)" class="link-inline text-xs">
View publications
</RouterLink>
<a :href="scholarProfileUrl(scholar.scholar_id)" target="_blank" rel="noreferrer" class="link-inline text-xs">
Open Google Scholar profile
</a>
</div>
</div>
</div>
<div class="grid gap-2">
<label class="text-sm font-medium text-ink-secondary" :for="`scholar-image-url-${scholar.id}`">
Profile image URL override
</label>
<div class="flex flex-wrap items-center gap-2">
<div class="min-w-0 flex-1">
<AppInput
:id="`scholar-image-url-${scholar.id}`"
:model-value="imageUrlDraft"
placeholder="https://example.com/avatar.jpg"
:disabled="imageBusy"
@update:model-value="emit('update:image-url-draft', $event as string)"
/>
</div>
<AppButton variant="secondary" :disabled="imageBusy" @click="emit('save-image-url')">
{{ imageSaving ? "Saving..." : "Save URL" }}
</AppButton>
</div>
<div class="flex flex-wrap items-center gap-2">
<label
:for="`scholar-image-upload-${scholar.id}`"
class="inline-flex min-h-10 cursor-pointer items-center justify-center rounded-lg border border-stroke-strong bg-action-secondary-bg px-3 py-2 text-sm font-semibold text-action-secondary-text transition hover:bg-action-secondary-hover-bg focus-within:outline-none focus-within:ring-2 focus-within:ring-focus-ring focus-within:ring-offset-2 focus-within:ring-offset-focus-offset"
:class="{ 'pointer-events-none opacity-60': imageBusy }"
>
{{ imageUploading ? "Uploading..." : "Upload image" }}
</label>
<input
:id="`scholar-image-upload-${scholar.id}`"
type="file"
class="sr-only"
accept="image/jpeg,image/png,image/webp,image/gif"
:disabled="imageBusy"
@change="emit('upload-image', $event)"
/>
<AppButton variant="ghost" :disabled="imageBusy" @click="emit('reset-image')">
Reset image
</AppButton>
</div>
</div>
<div class="flex flex-wrap items-center justify-between gap-2 border-t border-stroke-default pt-3">
<AppButton variant="secondary" :disabled="imageBusy || saving" @click="emit('toggle')">
{{ scholar.is_enabled ? "Disable scholar" : "Enable scholar" }}
</AppButton>
<AppButton variant="danger" :disabled="imageBusy || saving" @click="emit('delete')">
Delete scholar
</AppButton>
</div>
</div>
</AppModal>
</template>

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// @vitest-environment happy-dom
import { describe, expect, it, vi, beforeEach } from "vitest";
import { mount, flushPromises } from "@vue/test-utils";
import AdminIntegritySection from "./AdminIntegritySection.vue";
vi.mock("@/features/admin_dbops", () => ({
getAdminDbIntegrityReport: vi.fn(),
}));
import { getAdminDbIntegrityReport, type AdminDbIntegrityReport } from "@/features/admin_dbops";
const mockedGetReport = vi.mocked(getAdminDbIntegrityReport);
function buildReport(overrides: Partial<AdminDbIntegrityReport> = {}): AdminDbIntegrityReport {
return {
status: "ok",
warnings: [],
failures: [],
checked_at: "2025-01-15T12:00:00Z",
checks: [
{ name: "orphaned_publications", count: 0, severity: "metric", message: "No orphaned publications found." },
],
...overrides,
};
}
describe("AdminIntegritySection", () => {
beforeEach(() => {
mockedGetReport.mockReset();
});
it("renders the section heading", () => {
const wrapper = mount(AdminIntegritySection);
expect(wrapper.text()).toContain("Integrity Report");
});
it("exposes load function that fetches integrity report", async () => {
mockedGetReport.mockResolvedValueOnce(buildReport());
const wrapper = mount(AdminIntegritySection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(mockedGetReport).toHaveBeenCalled();
});
it("renders check results after loading", async () => {
mockedGetReport.mockResolvedValueOnce(buildReport());
const wrapper = mount(AdminIntegritySection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("orphaned_publications");
});
it("displays warning count when present", async () => {
mockedGetReport.mockResolvedValueOnce(buildReport({ warnings: ["w1", "w2", "w3"] }));
const wrapper = mount(AdminIntegritySection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("3");
});
it("renders status badge", async () => {
mockedGetReport.mockResolvedValueOnce(buildReport({ status: "failed" }));
const wrapper = mount(AdminIntegritySection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("failed");
});
});

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<script setup lang="ts">
import { ref } from "vue";
import AppBadge from "@/components/ui/AppBadge.vue";
import AppCard from "@/components/ui/AppCard.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
import AppRefreshButton from "@/components/ui/AppRefreshButton.vue";
import AppTable from "@/components/ui/AppTable.vue";
import {
getAdminDbIntegrityReport,
type AdminDbIntegrityCheck,
type AdminDbIntegrityReport,
} from "@/features/admin_dbops";
const refreshingIntegrity = ref(false);
const integrityReport = ref<AdminDbIntegrityReport | null>(null);
function formatTimestamp(value: string | null): string {
if (!value) return "n/a";
const parsed = new Date(value);
return Number.isNaN(parsed.getTime()) ? value : parsed.toLocaleString();
}
function statusTone(status: string): "success" | "warning" | "danger" | "info" | "neutral" {
if (status === "ok" || status === "completed" || status === "resolved") return "success";
if (status === "warning" || status === "running" || status === "queued") return "warning";
if (status === "failed") return "danger";
return "info";
}
function checkTone(check: AdminDbIntegrityCheck): "warning" | "danger" | "neutral" | "info" {
if (check.severity === "metric") return "info";
if (check.count <= 0) return "neutral";
return check.severity === "failure" ? "danger" : "warning";
}
async function refreshIntegrity(): Promise<void> {
refreshingIntegrity.value = true;
try {
integrityReport.value = await getAdminDbIntegrityReport();
} finally {
refreshingIntegrity.value = false;
}
}
async function load(): Promise<void> {
await refreshIntegrity();
}
defineExpose({ load });
</script>
<template>
<AppCard class="space-y-3">
<div class="flex flex-wrap items-center justify-between gap-2">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">Integrity Report</h2>
<AppHelpHint text="Read-only checks for known corruption patterns and data drift." />
</div>
<AppRefreshButton variant="secondary" :loading="refreshingIntegrity" title="Refresh integrity report" loading-title="Refreshing integrity report" @click="refreshIntegrity" />
</div>
<div v-if="integrityReport" class="flex flex-wrap items-center gap-2 text-xs">
<AppBadge :tone="statusTone(integrityReport.status)">Status: {{ integrityReport.status }}</AppBadge>
<AppBadge tone="warning">Warnings: {{ integrityReport.warnings.length }}</AppBadge>
<AppBadge tone="danger">Failures: {{ integrityReport.failures.length }}</AppBadge>
<span class="text-secondary">Checked: {{ formatTimestamp(integrityReport.checked_at) }}</span>
</div>
<AppTable v-if="integrityReport" label="Integrity checks">
<thead>
<tr>
<th scope="col">Check</th>
<th scope="col">Count</th>
<th scope="col">Severity</th>
<th scope="col">Message</th>
</tr>
</thead>
<tbody>
<tr v-for="check in integrityReport.checks" :key="check.name">
<td>{{ check.name }}</td>
<td>{{ check.count }}</td>
<td><AppBadge :tone="checkTone(check)">{{ check.severity }}</AppBadge></td>
<td>{{ check.message }}</td>
</tr>
</tbody>
</AppTable>
</AppCard>
</template>

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// @vitest-environment happy-dom
import { describe, expect, it, vi, beforeEach } from "vitest";
import { mount, flushPromises } from "@vue/test-utils";
import AdminPdfQueueSection from "./AdminPdfQueueSection.vue";
vi.mock("@/features/admin_dbops", () => ({
listAdminPdfQueue: vi.fn(),
requeueAdminPdfLookup: vi.fn(),
requeueAllAdminPdfLookups: vi.fn(),
}));
import { listAdminPdfQueue } from "@/features/admin_dbops";
const mockedListQueue = vi.mocked(listAdminPdfQueue);
function buildQueueItem(overrides: Record<string, unknown> = {}) {
return {
publication_id: 1,
title: "Test Paper",
display_identifier: null,
pdf_url: null,
status: "queued",
attempt_count: 0,
last_failure_reason: null,
last_failure_detail: null,
last_source: "unpaywall",
requested_by_user_id: null,
requested_by_email: null,
queued_at: "2025-01-15T12:00:00Z",
last_attempt_at: null,
resolved_at: null,
updated_at: "2025-01-15T12:00:00Z",
...overrides,
};
}
describe("AdminPdfQueueSection", () => {
beforeEach(() => {
mockedListQueue.mockReset();
});
it("renders the PDF queue heading", () => {
const wrapper = mount(AdminPdfQueueSection);
expect(wrapper.text()).toContain("PDF");
});
it("exposes load function that fetches PDF queue", async () => {
mockedListQueue.mockResolvedValueOnce({
items: [buildQueueItem()],
total_count: 1,
has_next: false,
has_prev: false,
page: 1,
page_size: 50,
});
const wrapper = mount(AdminPdfQueueSection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(mockedListQueue).toHaveBeenCalled();
});
it("renders queue items after loading", async () => {
mockedListQueue.mockResolvedValueOnce({
items: [buildQueueItem({ title: "My Paper" })],
total_count: 1,
has_next: false,
has_prev: false,
page: 1,
page_size: 50,
});
const wrapper = mount(AdminPdfQueueSection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("My Paper");
});
it("renders status filter dropdown", () => {
const wrapper = mount(AdminPdfQueueSection);
expect(wrapper.text()).toContain("Status");
});
it("renders queue all button", () => {
const wrapper = mount(AdminPdfQueueSection);
expect(wrapper.text()).toContain("Queue all");
});
it("shows pagination summary after loading", async () => {
mockedListQueue.mockResolvedValueOnce({
items: Array.from({ length: 3 }, (_, i) => buildQueueItem({ publication_id: i + 1 })),
total_count: 3,
has_next: false,
has_prev: false,
page: 1,
page_size: 50,
});
const wrapper = mount(AdminPdfQueueSection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("3");
});
});

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<script setup lang="ts">
import { computed, ref } from "vue";
import AppBadge from "@/components/ui/AppBadge.vue";
import AppButton from "@/components/ui/AppButton.vue";
import AppCard from "@/components/ui/AppCard.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
import AppRefreshButton from "@/components/ui/AppRefreshButton.vue";
import AppSelect from "@/components/ui/AppSelect.vue";
import AppTable from "@/components/ui/AppTable.vue";
import {
listAdminPdfQueue,
requeueAdminPdfLookup,
requeueAllAdminPdfLookups,
type AdminPdfQueueItem,
} from "@/features/admin_dbops";
import { useRequestState } from "@/composables/useRequestState";
const { clearAlerts, assignError, setSuccess } = useRequestState();
const refreshingPdfQueue = ref(false);
const requeueingPublicationId = ref<number | null>(null);
const requeueingAllPdfs = ref(false);
const pdfQueueItems = ref<AdminPdfQueueItem[]>([]);
const pdfQueueStatusFilter = ref("");
const pdfQueuePage = ref(1);
const pdfQueuePageSize = ref("50");
const pdfQueueTotalCount = ref(0);
const pdfQueueHasNext = ref(false);
const pdfQueueHasPrev = ref(false);
const pdfQueuePageSizeValue = computed(() => {
const parsed = Number(pdfQueuePageSize.value);
if (!Number.isFinite(parsed)) return 50;
return Math.max(1, Math.min(500, Math.trunc(parsed)));
});
const pdfQueueTotalPages = computed(() =>
Math.max(1, Math.ceil(pdfQueueTotalCount.value / Math.max(pdfQueuePageSizeValue.value, 1))),
);
const pdfQueueSummary = computed(() =>
`${pdfQueueTotalCount.value} item${pdfQueueTotalCount.value === 1 ? "" : "s"} total`,
);
function statusTone(status: string): "success" | "warning" | "danger" | "info" | "neutral" {
if (status === "ok" || status === "completed" || status === "resolved") return "success";
if (status === "warning" || status === "running" || status === "queued") return "warning";
if (status === "failed") return "danger";
return "info";
}
function formatTimestamp(value: string | null): string {
if (!value) return "n/a";
const parsed = new Date(value);
return Number.isNaN(parsed.getTime()) ? value : parsed.toLocaleString();
}
function canRequeuePdf(item: AdminPdfQueueItem): boolean {
return item.status !== "queued" && item.status !== "running";
}
async function refreshPdfQueue(): Promise<void> {
refreshingPdfQueue.value = true;
try {
const status = pdfQueueStatusFilter.value.trim() || null;
const page = await listAdminPdfQueue(pdfQueuePage.value, pdfQueuePageSizeValue.value, status);
pdfQueueItems.value = page.items;
pdfQueueTotalCount.value = page.total_count;
pdfQueueHasNext.value = page.has_next;
pdfQueueHasPrev.value = page.has_prev;
pdfQueuePage.value = page.page;
pdfQueuePageSize.value = String(page.page_size);
} finally {
refreshingPdfQueue.value = false;
}
}
async function onPdfQueueFilterChanged(): Promise<void> {
pdfQueuePage.value = 1;
await refreshPdfQueue();
}
async function onPdfQueuePageSizeChanged(): Promise<void> {
pdfQueuePage.value = 1;
await refreshPdfQueue();
}
async function onPdfQueuePrevPage(): Promise<void> {
if (!pdfQueueHasPrev.value || pdfQueuePage.value <= 1) return;
pdfQueuePage.value = Math.max(pdfQueuePage.value - 1, 1);
await refreshPdfQueue();
}
async function onPdfQueueNextPage(): Promise<void> {
if (!pdfQueueHasNext.value) return;
pdfQueuePage.value += 1;
await refreshPdfQueue();
}
async function onRequeuePdf(item: AdminPdfQueueItem): Promise<void> {
requeueingPublicationId.value = item.publication_id;
clearAlerts();
try {
const result = await requeueAdminPdfLookup(item.publication_id);
setSuccess(result.message);
await refreshPdfQueue();
} catch (error) {
assignError(error, "Unable to requeue PDF lookup.");
} finally {
requeueingPublicationId.value = null;
}
}
async function onRequeueAllPdfs(): Promise<void> {
requeueingAllPdfs.value = true;
clearAlerts();
try {
const result = await requeueAllAdminPdfLookups(5000);
setSuccess(result.message);
await refreshPdfQueue();
} catch (error) {
assignError(error, "Unable to queue missing PDF lookups.");
} finally {
requeueingAllPdfs.value = false;
}
}
async function load(): Promise<void> {
await refreshPdfQueue();
}
defineExpose({ load });
</script>
<template>
<AppCard class="space-y-3">
<div class="flex flex-wrap items-center justify-between gap-2">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">PDF Gathering Queue</h2>
<AppHelpHint text="Live queue and outcome history for PDF acquisition across all publications." />
</div>
<div class="flex items-center gap-2">
<AppSelect v-model="pdfQueueStatusFilter" class="min-w-[12rem] !py-1.5 !text-sm" @change="onPdfQueueFilterChanged">
<option value="">All statuses</option>
<option value="untracked">untracked</option>
<option value="queued">queued</option>
<option value="running">running</option>
<option value="failed">failed</option>
<option value="resolved">resolved</option>
</AppSelect>
<AppSelect v-model="pdfQueuePageSize" class="min-w-[10rem] !py-1.5 !text-sm" @change="onPdfQueuePageSizeChanged">
<option value="25">25 / page</option>
<option value="50">50 / page</option>
<option value="100">100 / page</option>
</AppSelect>
<AppButton variant="secondary" class="!min-h-8 whitespace-nowrap !px-2.5 !py-1 !text-xs" :disabled="requeueingAllPdfs" title="Queue all missing PDFs" @click="onRequeueAllPdfs">
{{ requeueingAllPdfs ? "Queueing..." : "Queue all" }}
</AppButton>
<AppRefreshButton variant="secondary" size="sm" :loading="refreshingPdfQueue" title="Refresh PDF queue" loading-title="Refreshing PDF queue" @click="refreshPdfQueue" />
</div>
</div>
<AppTable label="PDF queue table">
<thead>
<tr>
<th scope="col">Publication</th><th scope="col">Status</th><th scope="col">Attempts</th>
<th scope="col">Failure reason</th><th scope="col">Source</th><th scope="col">Requested by</th>
<th scope="col">Queued</th><th scope="col">Last attempt</th><th scope="col">Resolved</th><th scope="col">Actions</th>
</tr>
</thead>
<tbody>
<tr v-for="item in pdfQueueItems" :key="item.publication_id">
<td>
<div class="grid gap-1">
<span class="font-medium text-ink-primary">{{ item.title }}</span>
<a v-if="item.display_identifier?.url" :href="item.display_identifier.url" target="_blank" rel="noreferrer" class="link-inline text-xs">{{ item.display_identifier.label }}</a>
</div>
</td>
<td><AppBadge :tone="statusTone(item.status)">{{ item.status }}</AppBadge></td>
<td>{{ item.attempt_count }}</td>
<td>{{ item.last_failure_reason || "n/a" }}</td>
<td>{{ item.last_source || "n/a" }}</td>
<td>{{ item.requested_by_email || "n/a" }}</td>
<td>{{ formatTimestamp(item.queued_at) }}</td>
<td>{{ formatTimestamp(item.last_attempt_at) }}</td>
<td>{{ formatTimestamp(item.resolved_at) }}</td>
<td>
<AppButton variant="ghost" :disabled="requeueingPublicationId === item.publication_id || !canRequeuePdf(item)" @click="onRequeuePdf(item)">
{{ requeueingPublicationId === item.publication_id ? "Requeueing..." : "Requeue" }}
</AppButton>
</td>
</tr>
</tbody>
</AppTable>
<div class="flex flex-wrap items-center justify-between gap-2 text-xs text-secondary">
<span>{{ pdfQueueSummary }}</span>
<div class="flex items-center gap-2">
<span>Page {{ pdfQueuePage }} / {{ pdfQueueTotalPages }}</span>
<AppButton variant="ghost" :disabled="!pdfQueueHasPrev" @click="onPdfQueuePrevPage">Prev</AppButton>
<AppButton variant="ghost" :disabled="!pdfQueueHasNext" @click="onPdfQueueNextPage">Next</AppButton>
</div>
</div>
</AppCard>
</template>

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// @vitest-environment happy-dom
import { describe, expect, it, vi, beforeEach } from "vitest";
import { mount, flushPromises } from "@vue/test-utils";
import AdminRepairsSection from "./AdminRepairsSection.vue";
vi.mock("@/features/admin_dbops", () => ({
listAdminDbRepairJobs: vi.fn(),
triggerPublicationLinkRepair: vi.fn(),
triggerPublicationNearDuplicateRepair: vi.fn(),
dropAllPublications: vi.fn(),
}));
import { listAdminDbRepairJobs, dropAllPublications } from "@/features/admin_dbops";
const mockedListJobs = vi.mocked(listAdminDbRepairJobs);
const mockedDrop = vi.mocked(dropAllPublications);
function buildUser(overrides: Record<string, unknown> = {}) {
return {
id: 1,
email: "admin@test.com",
is_admin: true,
is_active: true,
created_at: "2025-01-01T00:00:00Z",
updated_at: "2025-01-01T00:00:00Z",
...overrides,
};
}
describe("AdminRepairsSection", () => {
beforeEach(() => {
mockedListJobs.mockReset();
mockedDrop.mockReset();
});
it("renders the repair sections", () => {
const wrapper = mount(AdminRepairsSection, { props: { users: [buildUser()] } });
expect(wrapper.text()).toContain("Publication Link Repair");
expect(wrapper.text()).toContain("Near-Duplicate");
expect(wrapper.text()).toContain("Drop All Publications");
});
it("exposes load function that fetches repair jobs", async () => {
mockedListJobs.mockResolvedValueOnce([]);
const wrapper = mount(AdminRepairsSection, { props: { users: [buildUser()] } });
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(mockedListJobs).toHaveBeenCalled();
});
it("renders repair job rows after loading", async () => {
mockedListJobs.mockResolvedValueOnce([
{
id: 1,
job_name: "publication_link_repair",
status: "completed",
dry_run: true,
requested_by: "admin@test.com",
scope: {},
summary: { links_in_scope: 100, links_deleted: 5 },
error_text: null,
started_at: "2025-01-15T12:00:00Z",
finished_at: "2025-01-15T12:01:00Z",
created_at: "2025-01-15T12:00:00Z",
updated_at: "2025-01-15T12:01:00Z",
},
]);
const wrapper = mount(AdminRepairsSection, { props: { users: [buildUser()] } });
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("publication_link_repair");
});
it("has typed confirmation guard for drop all publications", () => {
const wrapper = mount(AdminRepairsSection, { props: { users: [buildUser()] } });
const dropButton = wrapper.findAll("button").find((b) => b.text().includes("Drop all publications"));
expect(dropButton?.attributes("disabled")).toBeDefined();
});
it("renders dry-run toggle in repair form", () => {
const wrapper = mount(AdminRepairsSection, { props: { users: [buildUser()] } });
expect(wrapper.text()).toContain("Dry-run");
});
it("renders scope mode selector", () => {
const wrapper = mount(AdminRepairsSection, { props: { users: [buildUser()] } });
expect(wrapper.text()).toContain("Scope");
});
});

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<script setup lang="ts">
import { computed, ref } from "vue";
import AppBadge from "@/components/ui/AppBadge.vue";
import AppButton from "@/components/ui/AppButton.vue";
import AppCard from "@/components/ui/AppCard.vue";
import AppCheckbox from "@/components/ui/AppCheckbox.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
import AppInput from "@/components/ui/AppInput.vue";
import AppRefreshButton from "@/components/ui/AppRefreshButton.vue";
import AppSelect from "@/components/ui/AppSelect.vue";
import AppTable from "@/components/ui/AppTable.vue";
import {
dropAllPublications,
listAdminDbRepairJobs,
triggerPublicationLinkRepair,
triggerPublicationNearDuplicateRepair,
type AdminDbRepairJob,
type NearDuplicateCluster,
type TriggerPublicationLinkRepairResult,
type TriggerPublicationNearDuplicateRepairResult,
} from "@/features/admin_dbops";
import type { AdminUser } from "@/features/admin_users";
import { useRequestState } from "@/composables/useRequestState";
const props = defineProps<{
users: AdminUser[];
}>();
const SCOPE_SINGLE_USER = "single_user";
const SCOPE_ALL_USERS = "all_users";
const APPLY_ALL_USERS_CONFIRM_TEXT = "REPAIR ALL USERS";
const APPLY_NEAR_DUPLICATES_CONFIRM_TEXT = "MERGE SELECTED DUPLICATES";
const DROP_PUBLICATIONS_CONFIRM_TEXT = "DROP ALL PUBLICATIONS";
type RepairScopeMode = typeof SCOPE_SINGLE_USER | typeof SCOPE_ALL_USERS;
const { clearAlerts, assignError, setSuccess } = useRequestState();
const refreshingJobs = ref(false);
const runningRepair = ref(false);
const repairJobs = ref<AdminDbRepairJob[]>([]);
const lastRepairResult = ref<TriggerPublicationLinkRepairResult | null>(null);
const repairScopeMode = ref<RepairScopeMode>(SCOPE_SINGLE_USER);
const repairUserId = ref("");
const repairScholarIds = ref("");
const repairRequestedBy = ref("");
const repairDryRun = ref(true);
const repairGcOrphans = ref(false);
const repairConfirmationText = ref("");
const runningNearDuplicateScan = ref(false);
const applyingNearDuplicateRepair = ref(false);
const nearDuplicateRequestedBy = ref("");
const nearDuplicateSimilarityThreshold = ref("0.78");
const nearDuplicateMinSharedTokens = ref("3");
const nearDuplicateMaxYearDelta = ref("1");
const nearDuplicateMaxClusters = ref("25");
const nearDuplicateConfirmationText = ref("");
const nearDuplicateSelectedClusterKeys = ref<Set<string>>(new Set());
const nearDuplicateClusters = ref<NearDuplicateCluster[]>([]);
const lastNearDuplicateResult = ref<TriggerPublicationNearDuplicateRepairResult | null>(null);
const droppingPublications = ref(false);
const dropConfirmationText = ref("");
const dropResult = ref<{ deleted_count: number; message: string } | null>(null);
const dropConfirmationValid = computed(() => dropConfirmationText.value.trim() === DROP_PUBLICATIONS_CONFIRM_TEXT);
const typedConfirmationRequired = computed(
() => repairScopeMode.value === SCOPE_ALL_USERS && !repairDryRun.value,
);
const nearDuplicateApplyEnabled = computed(() => nearDuplicateSelectedClusterKeys.value.size > 0);
function statusTone(status: string): "success" | "warning" | "danger" | "info" | "neutral" {
if (status === "ok" || status === "completed" || status === "resolved") return "success";
if (status === "warning" || status === "running" || status === "queued") return "warning";
if (status === "failed") return "danger";
return "info";
}
function formatTimestamp(value: string | null): string {
if (!value) return "n/a";
const parsed = new Date(value);
return Number.isNaN(parsed.getTime()) ? value : parsed.toLocaleString();
}
function parseScholarIds(raw: string): number[] {
const tokens = raw.split(/[,\s]+/).map((t) => t.trim()).filter((t) => t.length > 0);
const deduped = new Set<number>();
for (const token of tokens) {
const parsed = Number(token);
if (!Number.isInteger(parsed) || parsed < 1) throw new Error("Scholar profile IDs must be positive integers.");
deduped.add(parsed);
}
return [...deduped];
}
function parseRepairUserIdOrThrow(raw: string): number {
const parsed = Number((raw || "").trim());
if (!Number.isInteger(parsed) || parsed < 1) throw new Error("Select a valid target user.");
return parsed;
}
function validateTypedConfirmation(): string {
const normalized = repairConfirmationText.value.trim();
if (typedConfirmationRequired.value && normalized !== APPLY_ALL_USERS_CONFIRM_TEXT) {
throw new Error(`Type '${APPLY_ALL_USERS_CONFIRM_TEXT}' to apply repair for all users.`);
}
return normalized;
}
function parseBoundedNumber(raw: string, opts: { minimum: number; maximum: number; fallback: number }): number {
const parsed = Number(raw.trim());
if (!Number.isFinite(parsed)) return opts.fallback;
return Math.max(opts.minimum, Math.min(opts.maximum, parsed));
}
function nearDuplicatePayloadBase() {
return {
similarity_threshold: parseBoundedNumber(nearDuplicateSimilarityThreshold.value, { minimum: 0.5, maximum: 1.0, fallback: 0.78 }),
min_shared_tokens: Math.trunc(parseBoundedNumber(nearDuplicateMinSharedTokens.value, { minimum: 1, maximum: 8, fallback: 3 })),
max_year_delta: Math.trunc(parseBoundedNumber(nearDuplicateMaxYearDelta.value, { minimum: 0, maximum: 5, fallback: 1 })),
max_clusters: Math.trunc(parseBoundedNumber(nearDuplicateMaxClusters.value, { minimum: 1, maximum: 200, fallback: 25 })),
requested_by: nearDuplicateRequestedBy.value.trim() || undefined,
};
}
function checkboxEventChecked(event: Event): boolean {
return event.target instanceof HTMLInputElement ? event.target.checked : false;
}
function summaryCount(job: AdminDbRepairJob, key: string): string {
const value = job.summary[key];
return typeof value === "number" ? String(value) : "n/a";
}
function ensureRepairUserSelected(): void {
if (repairScopeMode.value !== SCOPE_SINGLE_USER || repairUserId.value || props.users.length === 0) return;
repairUserId.value = String(props.users[0].id);
}
async function refreshRepairJobs(): Promise<void> {
refreshingJobs.value = true;
try { repairJobs.value = await listAdminDbRepairJobs(30); } finally { refreshingJobs.value = false; }
}
async function onRunRepair(): Promise<void> {
runningRepair.value = true;
clearAlerts();
try {
const payload = {
scope_mode: repairScopeMode.value,
scholar_profile_ids: parseScholarIds(repairScholarIds.value),
dry_run: repairDryRun.value,
gc_orphan_publications: repairGcOrphans.value,
requested_by: repairRequestedBy.value.trim() || undefined,
confirmation_text: validateTypedConfirmation() || undefined,
user_id: repairScopeMode.value === SCOPE_SINGLE_USER ? parseRepairUserIdOrThrow(repairUserId.value) : undefined,
};
const result = await triggerPublicationLinkRepair(payload);
lastRepairResult.value = result;
setSuccess(`Repair job #${result.job_id} completed (${result.status}).`);
repairConfirmationText.value = "";
await refreshRepairJobs();
} catch (error) {
assignError(error, "Unable to run publication link repair.");
} finally {
runningRepair.value = false;
}
}
function onToggleNearDuplicateClusterSelection(clusterKey: string, checked: boolean): void {
const next = new Set(nearDuplicateSelectedClusterKeys.value);
if (checked) { next.add(clusterKey); } else { next.delete(clusterKey); }
nearDuplicateSelectedClusterKeys.value = next;
}
async function onRunNearDuplicateScan(): Promise<void> {
runningNearDuplicateScan.value = true;
clearAlerts();
try {
const result = await triggerPublicationNearDuplicateRepair({ dry_run: true, ...nearDuplicatePayloadBase() });
nearDuplicateClusters.value = result.clusters;
nearDuplicateSelectedClusterKeys.value = new Set();
nearDuplicateConfirmationText.value = "";
lastNearDuplicateResult.value = result;
setSuccess(`Near-duplicate scan completed (job #${result.job_id}).`);
await refreshRepairJobs();
} catch (error) {
assignError(error, "Unable to scan for near-duplicate publications.");
} finally {
runningNearDuplicateScan.value = false;
}
}
async function onApplyNearDuplicateRepair(): Promise<void> {
applyingNearDuplicateRepair.value = true;
clearAlerts();
try {
const selectedKeys = [...nearDuplicateSelectedClusterKeys.value].sort((a, b) => a.localeCompare(b));
if (selectedKeys.length === 0) throw new Error("Select at least one near-duplicate cluster before applying.");
if (nearDuplicateConfirmationText.value.trim() !== APPLY_NEAR_DUPLICATES_CONFIRM_TEXT) {
throw new Error(`Type '${APPLY_NEAR_DUPLICATES_CONFIRM_TEXT}' to confirm merge.`);
}
const result = await triggerPublicationNearDuplicateRepair({
dry_run: false,
selected_cluster_keys: selectedKeys,
confirmation_text: nearDuplicateConfirmationText.value.trim(),
...nearDuplicatePayloadBase(),
});
nearDuplicateClusters.value = result.clusters;
nearDuplicateSelectedClusterKeys.value = new Set();
nearDuplicateConfirmationText.value = "";
lastNearDuplicateResult.value = result;
setSuccess(`Merged selected near-duplicate clusters (job #${result.job_id}).`);
await refreshRepairJobs();
} catch (error) {
assignError(error, "Unable to apply near-duplicate merge.");
} finally {
applyingNearDuplicateRepair.value = false;
}
}
async function onDropAllPublications(): Promise<void> {
droppingPublications.value = true;
clearAlerts();
dropResult.value = null;
try {
const result = await dropAllPublications(dropConfirmationText.value.trim());
dropResult.value = result;
setSuccess(result.message);
dropConfirmationText.value = "";
} catch (error) {
assignError(error, "Unable to drop publications.");
} finally {
droppingPublications.value = false;
}
}
async function load(): Promise<void> {
await refreshRepairJobs();
ensureRepairUserSelected();
}
defineExpose({ load });
</script>
<template>
<section class="grid gap-4">
<AppCard class="space-y-3">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">Publication Link Repair</h2>
<AppHelpHint text="Dry-run first. For all-users apply mode, typed confirmation is required." />
</div>
<form class="grid gap-3 md:grid-cols-2" @submit.prevent="onRunRepair">
<label class="grid gap-1 text-sm font-medium text-ink-secondary">
<span>Scope</span>
<AppSelect v-model="repairScopeMode" @change="ensureRepairUserSelected">
<option :value="SCOPE_SINGLE_USER">Single user</option>
<option :value="SCOPE_ALL_USERS">All users</option>
</AppSelect>
</label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary">
<span>Target user</span>
<AppSelect v-model="repairUserId" :disabled="repairScopeMode === SCOPE_ALL_USERS || users.length === 0">
<option value="" disabled>Select user</option>
<option v-for="user in users" :key="user.id" :value="String(user.id)">{{ user.email }} (ID {{ user.id }})</option>
</AppSelect>
</label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary md:col-span-2">
<span>Scholar profile IDs (optional)</span>
<AppInput v-model="repairScholarIds" placeholder="e.g. 12,13,14" />
</label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary md:col-span-2">
<span>Requested by (optional)</span>
<AppInput v-model="repairRequestedBy" placeholder="email/name/ticket id" />
</label>
<div class="flex flex-wrap items-center gap-4 md:col-span-2">
<AppCheckbox id="repair-dry-run" v-model="repairDryRun" label="Dry-run (no writes)" />
<AppCheckbox id="repair-gc-orphans" v-model="repairGcOrphans" label="Delete orphan publications" />
</div>
<label v-if="typedConfirmationRequired" class="grid gap-1 text-sm font-medium text-ink-secondary md:col-span-2">
<span>Type '{{ APPLY_ALL_USERS_CONFIRM_TEXT }}' to confirm</span>
<AppInput v-model="repairConfirmationText" :placeholder="APPLY_ALL_USERS_CONFIRM_TEXT" />
</label>
<p v-if="repairScopeMode === SCOPE_ALL_USERS" class="text-xs text-secondary md:col-span-2">All-users scope includes every scholar profile across all accounts.</p>
<div class="md:col-span-2">
<AppButton type="submit" :disabled="runningRepair">{{ runningRepair ? "Running..." : "Run repair job" }}</AppButton>
</div>
</form>
<div v-if="lastRepairResult" class="rounded-lg border border-stroke-default bg-surface-card-muted p-3 text-xs">
<div class="mb-2 flex flex-wrap items-center gap-2">
<AppBadge :tone="statusTone(lastRepairResult.status)">Job #{{ lastRepairResult.job_id }}</AppBadge>
<span class="text-secondary">Status: {{ lastRepairResult.status }}</span>
</div>
<pre class="overflow-x-auto text-secondary">{{ JSON.stringify(lastRepairResult.summary, null, 2) }}</pre>
</div>
</AppCard>
<AppCard class="space-y-3">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">Near-Duplicate Publication Repair</h2>
<AppHelpHint text="Run a dry-run scan first, verify candidate clusters, then merge only selected clusters." />
</div>
<form class="grid gap-3 md:grid-cols-2" @submit.prevent="onRunNearDuplicateScan">
<label class="grid gap-1 text-sm font-medium text-ink-secondary"><span>Similarity threshold</span><AppInput v-model="nearDuplicateSimilarityThreshold" placeholder="0.78" /></label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary"><span>Min shared tokens</span><AppInput v-model="nearDuplicateMinSharedTokens" placeholder="3" /></label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary"><span>Max year delta</span><AppInput v-model="nearDuplicateMaxYearDelta" placeholder="1" /></label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary"><span>Max preview clusters</span><AppInput v-model="nearDuplicateMaxClusters" placeholder="25" /></label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary md:col-span-2"><span>Requested by (optional)</span><AppInput v-model="nearDuplicateRequestedBy" placeholder="email/name/ticket id" /></label>
<div class="md:col-span-2">
<AppButton type="submit" :disabled="runningNearDuplicateScan">{{ runningNearDuplicateScan ? "Scanning..." : "Scan near-duplicate clusters" }}</AppButton>
</div>
</form>
<div v-if="nearDuplicateClusters.length > 0" class="space-y-3">
<AppTable label="Near duplicate clusters table">
<thead><tr><th scope="col">Select</th><th scope="col">Cluster</th><th scope="col">Winner</th><th scope="col">Members</th><th scope="col">Similarity</th></tr></thead>
<tbody>
<tr v-for="cluster in nearDuplicateClusters" :key="cluster.cluster_key">
<td><input :id="`near-dup-${cluster.cluster_key}`" class="h-4 w-4 rounded border-stroke-default bg-surface-card" type="checkbox" :checked="nearDuplicateSelectedClusterKeys.has(cluster.cluster_key)" @change="onToggleNearDuplicateClusterSelection(cluster.cluster_key, checkboxEventChecked($event))" /></td>
<td class="font-mono text-xs">{{ cluster.cluster_key }}</td>
<td>#{{ cluster.winner_publication_id }}</td>
<td><div class="grid gap-1"><span v-for="member in cluster.members" :key="member.publication_id" class="text-xs text-secondary">#{{ member.publication_id }} · {{ member.title }}</span></div></td>
<td>{{ cluster.similarity_score.toFixed(2) }}</td>
</tr>
</tbody>
</AppTable>
<form class="grid gap-3 md:grid-cols-2" @submit.prevent="onApplyNearDuplicateRepair">
<label class="grid gap-1 text-sm font-medium text-ink-secondary md:col-span-2"><span>Type '{{ APPLY_NEAR_DUPLICATES_CONFIRM_TEXT }}' to merge selected clusters</span><AppInput v-model="nearDuplicateConfirmationText" :placeholder="APPLY_NEAR_DUPLICATES_CONFIRM_TEXT" /></label>
<div class="md:col-span-2"><AppButton type="submit" :disabled="applyingNearDuplicateRepair || !nearDuplicateApplyEnabled">{{ applyingNearDuplicateRepair ? "Merging..." : "Merge selected clusters" }}</AppButton></div>
</form>
</div>
<div v-if="lastNearDuplicateResult" class="rounded-lg border border-stroke-default bg-surface-card-muted p-3 text-xs">
<div class="mb-2 flex flex-wrap items-center gap-2"><AppBadge :tone="statusTone(lastNearDuplicateResult.status)">Job #{{ lastNearDuplicateResult.job_id }}</AppBadge><span class="text-secondary">Status: {{ lastNearDuplicateResult.status }}</span></div>
<pre class="overflow-x-auto text-secondary">{{ JSON.stringify(lastNearDuplicateResult.summary, null, 2) }}</pre>
</div>
</AppCard>
<AppCard class="space-y-3">
<div class="flex flex-wrap items-center justify-between gap-2">
<div class="flex items-center gap-1"><h2 class="text-lg font-semibold text-ink-primary">Recent Repair Jobs</h2><AppHelpHint text="Audit history and summary counters for each repair job." /></div>
<AppRefreshButton variant="secondary" :loading="refreshingJobs" title="Refresh repair jobs" loading-title="Refreshing repair jobs" @click="refreshRepairJobs" />
</div>
<AppTable label="Repair jobs table">
<thead><tr><th scope="col">Job</th><th scope="col">Status</th><th scope="col">Mode</th><th scope="col">Requested by</th><th scope="col">Created</th><th scope="col">Links in scope</th><th scope="col">Links deleted</th></tr></thead>
<tbody>
<tr v-for="job in repairJobs" :key="job.id">
<td>#{{ job.id }} · {{ job.job_name }}</td>
<td><AppBadge :tone="statusTone(job.status)">{{ job.status }}</AppBadge></td>
<td>{{ job.dry_run ? "dry-run" : "apply" }}</td>
<td>{{ job.requested_by || "n/a" }}</td>
<td>{{ formatTimestamp(job.created_at) }}</td>
<td>{{ summaryCount(job, "links_in_scope") }}</td>
<td>{{ summaryCount(job, "links_deleted") }}</td>
</tr>
</tbody>
</AppTable>
</AppCard>
<AppCard class="space-y-3 border-state-danger-border">
<div class="flex items-center gap-1"><h2 class="text-lg font-semibold text-state-danger-text">Drop All Publications</h2><AppHelpHint text="Permanently delete ALL publications, links, identifiers, and PDF jobs. Scholar baselines will be reset so the next run re-discovers everything." /></div>
<p class="text-sm text-secondary">This action is <strong>irreversible</strong>. It deletes every publication record across all users. The next ingestion run will re-populate all data from scratch.</p>
<form class="grid gap-3" @submit.prevent="onDropAllPublications">
<label class="grid gap-1 text-sm font-medium text-ink-secondary"><span>Type '{{ DROP_PUBLICATIONS_CONFIRM_TEXT }}' to confirm</span><AppInput v-model="dropConfirmationText" :placeholder="DROP_PUBLICATIONS_CONFIRM_TEXT" autocomplete="off" /></label>
<div><AppButton type="submit" variant="danger" :disabled="droppingPublications || !dropConfirmationValid">{{ droppingPublications ? "Dropping..." : "Drop all publications" }}</AppButton></div>
</form>
<div v-if="dropResult" class="rounded-lg border border-stroke-default bg-surface-card-muted p-3 text-xs">
<div class="mb-1 flex items-center gap-2"><AppBadge tone="danger">Deleted: {{ dropResult.deleted_count }}</AppBadge></div>
<p class="text-secondary">{{ dropResult.message }}</p>
</div>
</AppCard>
</section>
</template>

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// @vitest-environment happy-dom
import { describe, expect, it, vi, beforeEach } from "vitest";
import { mount, flushPromises } from "@vue/test-utils";
import AdminUsersSection from "./AdminUsersSection.vue";
vi.mock("@/features/admin_users", () => ({
listAdminUsers: vi.fn(),
createAdminUser: vi.fn(),
setAdminUserActive: vi.fn(),
resetAdminUserPassword: vi.fn(),
}));
import { listAdminUsers, createAdminUser } from "@/features/admin_users";
const mockedListUsers = vi.mocked(listAdminUsers);
const mockedCreateUser = vi.mocked(createAdminUser);
function buildUser(overrides: Record<string, unknown> = {}) {
return {
id: 1,
email: "user@example.com",
is_admin: false,
is_active: true,
created_at: "2025-01-01T00:00:00Z",
updated_at: "2025-01-01T00:00:00Z",
...overrides,
};
}
describe("AdminUsersSection", () => {
beforeEach(() => {
mockedListUsers.mockReset();
mockedCreateUser.mockReset();
});
it("renders the create user form", () => {
const wrapper = mount(AdminUsersSection);
expect(wrapper.text()).toContain("Create user");
});
it("exposes load function that calls listAdminUsers", async () => {
mockedListUsers.mockResolvedValueOnce([buildUser()]);
const wrapper = mount(AdminUsersSection);
const vm = wrapper.vm as unknown as { load: () => Promise<void>; users: unknown[] };
await vm.load();
await flushPromises();
expect(mockedListUsers).toHaveBeenCalled();
expect(vm.users).toHaveLength(1);
});
it("renders user table after loading", async () => {
mockedListUsers.mockResolvedValueOnce([buildUser({ email: "alice@test.com" })]);
const wrapper = mount(AdminUsersSection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await vm.load();
await flushPromises();
expect(wrapper.text()).toContain("alice@test.com");
});
it("propagates error when load fails", async () => {
mockedListUsers.mockRejectedValueOnce(new Error("Network error"));
const wrapper = mount(AdminUsersSection);
const vm = wrapper.vm as unknown as { load: () => Promise<void> };
await expect(vm.load()).rejects.toThrow("Network error");
});
it("emits user creation via form submit", async () => {
mockedCreateUser.mockResolvedValueOnce(buildUser({ email: "new@test.com" }));
mockedListUsers.mockResolvedValue([]);
const wrapper = mount(AdminUsersSection);
const inputs = wrapper.findAll("input");
const emailInput = inputs.find((i) => (i.element as HTMLInputElement).type === "email");
const passwordInput = inputs.find((i) => (i.element as HTMLInputElement).type === "password");
if (emailInput && passwordInput) {
await emailInput.setValue("new@test.com");
await passwordInput.setValue("securepassword123");
await wrapper.find("form").trigger("submit");
await flushPromises();
expect(mockedCreateUser).toHaveBeenCalled();
}
});
});

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<script setup lang="ts">
import { computed, ref } from "vue";
import AppButton from "@/components/ui/AppButton.vue";
import AppCard from "@/components/ui/AppCard.vue";
import AppCheckbox from "@/components/ui/AppCheckbox.vue";
import AppHelpHint from "@/components/ui/AppHelpHint.vue";
import AppInput from "@/components/ui/AppInput.vue";
import AppModal from "@/components/ui/AppModal.vue";
import AppRefreshButton from "@/components/ui/AppRefreshButton.vue";
import AppTable from "@/components/ui/AppTable.vue";
import {
createAdminUser,
listAdminUsers,
resetAdminUserPassword,
setAdminUserActive,
type AdminUser,
} from "@/features/admin_users";
import { useRequestState } from "@/composables/useRequestState";
const { errorMessage, errorRequestId, successMessage, clearAlerts, assignError, setSuccess } = useRequestState();
const refreshingUsers = ref(false);
const creating = ref(false);
const togglingUserId = ref<number | null>(null);
const resettingPassword = ref(false);
const users = ref<AdminUser[]>([]);
const email = ref("");
const password = ref("");
const createIsAdmin = ref(false);
const activeUserId = ref<number | null>(null);
const resetPassword = ref("");
const activeUser = computed(() => users.value.find((u) => u.id === activeUserId.value) ?? null);
function userRoleLabel(user: AdminUser): string {
return user.is_admin ? "Admin" : "User";
}
function statusDotClass(user: AdminUser): string {
return user.is_active ? "bg-success-500 ring-success-200" : "bg-ink-muted/70 ring-stroke-default";
}
function formatTimestamp(value: string | null): string {
if (!value) return "n/a";
const parsed = new Date(value);
return Number.isNaN(parsed.getTime()) ? value : parsed.toLocaleString();
}
function openUserModal(user: AdminUser): void {
activeUserId.value = user.id;
resetPassword.value = "";
}
function closeUserModal(): void {
activeUserId.value = null;
resetPassword.value = "";
}
async function refreshUsers(): Promise<void> {
refreshingUsers.value = true;
try {
users.value = await listAdminUsers();
if (activeUserId.value !== null && !users.value.some((item) => item.id === activeUserId.value)) {
closeUserModal();
}
} finally {
refreshingUsers.value = false;
}
}
async function onCreateUser(): Promise<void> {
creating.value = true;
clearAlerts();
try {
if (!email.value.trim() || !password.value) throw new Error("Email and password are required.");
const created = await createAdminUser({ email: email.value.trim(), password: password.value, is_admin: createIsAdmin.value });
email.value = "";
password.value = "";
createIsAdmin.value = false;
setSuccess(`User created: ${created.email}`);
await refreshUsers();
} catch (error) {
assignError(error, "Unable to create user.");
} finally {
creating.value = false;
}
}
async function onToggleUser(user: AdminUser): Promise<void> {
togglingUserId.value = user.id;
clearAlerts();
try {
const updated = await setAdminUserActive(user.id, !user.is_active);
setSuccess(`${updated.email} is now ${updated.is_active ? "active" : "inactive"}.`);
await refreshUsers();
} catch (error) {
assignError(error, "Unable to update user.");
} finally {
togglingUserId.value = null;
}
}
async function onResetPassword(): Promise<void> {
const user = activeUser.value;
if (!user) return;
resettingPassword.value = true;
clearAlerts();
try {
const candidate = resetPassword.value.trim();
if (candidate.length < 12) throw new Error("New password must be at least 12 characters.");
const result = await resetAdminUserPassword(user.id, candidate);
resetPassword.value = "";
setSuccess(result.message || `Password reset for ${user.email}.`);
} catch (error) {
assignError(error, "Unable to reset password.");
} finally {
resettingPassword.value = false;
}
}
async function load(): Promise<void> {
await refreshUsers();
}
defineExpose({ load, errorMessage, errorRequestId, successMessage, users });
</script>
<template>
<AppCard class="space-y-4">
<div class="flex flex-wrap items-center justify-between gap-2">
<div class="flex items-center gap-1">
<h2 class="text-lg font-semibold text-ink-primary">Users</h2>
<AppHelpHint text="Create accounts, toggle active status, and reset passwords." />
</div>
<AppRefreshButton variant="secondary" :loading="refreshingUsers" title="Refresh users" loading-title="Refreshing users" @click="refreshUsers" />
</div>
<form class="grid gap-3 md:grid-cols-3" @submit.prevent="onCreateUser">
<label class="grid gap-1 text-sm font-medium text-ink-secondary">
<span>Email</span>
<AppInput v-model="email" type="email" autocomplete="off" />
</label>
<label class="grid gap-1 text-sm font-medium text-ink-secondary">
<span>Password</span>
<AppInput v-model="password" type="password" autocomplete="new-password" />
</label>
<div class="grid gap-2 text-sm font-medium text-ink-secondary">
<span>Role</span>
<div class="flex items-center gap-3">
<AppCheckbox id="admin-create-user-is-admin" v-model="createIsAdmin" label="Grant admin" />
<AppButton type="submit" :disabled="creating">{{ creating ? "Creating..." : "Create user" }}</AppButton>
</div>
</div>
</form>
<AppTable label="Users table">
<thead>
<tr>
<th scope="col">Email</th>
<th scope="col">Role</th>
<th scope="col">Status</th>
<th scope="col">Actions</th>
</tr>
</thead>
<tbody>
<tr v-for="user in users" :key="user.id">
<td class="align-middle">
<button type="button" class="group inline-flex items-center gap-2 rounded-md px-1 py-0.5 text-left text-ink-primary transition hover:bg-surface-card-muted focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-focus-ring focus-visible:ring-offset-2 focus-visible:ring-offset-focus-offset" @click="openUserModal(user)">
<span :class="statusDotClass(user)" class="h-2.5 w-2.5 rounded-full ring-2" :aria-label="user.is_active ? 'Active user' : 'Inactive user'" />
<span class="underline-offset-2 group-hover:underline">{{ user.email }}</span>
</button>
</td>
<td>{{ userRoleLabel(user) }}</td>
<td>{{ user.is_active ? "active" : "inactive" }}</td>
<td class="flex flex-wrap items-center gap-2">
<AppButton variant="secondary" :disabled="togglingUserId === user.id" @click="onToggleUser(user)">
{{ togglingUserId === user.id ? "Updating..." : user.is_active ? "Deactivate" : "Activate" }}
</AppButton>
<AppButton variant="ghost" @click="openUserModal(user)">Manage</AppButton>
</td>
</tr>
</tbody>
</AppTable>
</AppCard>
<AppModal :open="activeUser !== null" title="User settings" @close="closeUserModal">
<div v-if="activeUser" class="grid gap-4">
<div class="space-y-1">
<div class="flex items-center gap-2">
<span :class="statusDotClass(activeUser)" class="h-2.5 w-2.5 rounded-full ring-2" :aria-label="activeUser.is_active ? 'Active user' : 'Inactive user'" />
<p class="truncate text-sm font-semibold text-ink-primary">{{ activeUser.email }}</p>
</div>
<p class="text-sm text-secondary">Role: {{ userRoleLabel(activeUser) }}</p>
<p class="text-xs text-secondary">Last updated: {{ formatTimestamp(activeUser.updated_at) }}</p>
</div>
<div class="grid gap-2">
<label class="grid gap-1 text-sm font-medium text-ink-secondary">
<span>New password</span>
<AppInput id="admin-reset-password" v-model="resetPassword" type="password" autocomplete="new-password" placeholder="At least 12 characters" />
</label>
<div class="flex flex-wrap gap-2">
<AppButton :disabled="resettingPassword" @click="onResetPassword">{{ resettingPassword ? "Resetting..." : "Reset password" }}</AppButton>
<AppButton variant="secondary" :disabled="togglingUserId === activeUser.id" @click="onToggleUser(activeUser)">
{{ togglingUserId === activeUser.id ? "Updating..." : activeUser.is_active ? "Deactivate user" : "Activate user" }}
</AppButton>
</div>
</div>
</div>
</AppModal>
</template>

1165
frontend/src/pages/PublicationsPage.vue
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1179
frontend/src/pages/ScholarsPage.vue
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114
tests/integration/helpers.py
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@ -1,11 +1,35 @@
from __future__ import annotations
import asyncio
from pathlib import Path
from fastapi.testclient import TestClient
from sqlalchemy import text
from sqlalchemy.ext.asyncio import AsyncSession
from app.auth.security import PasswordService
REGRESSION_FIXTURE_DIR = Path("tests/fixtures/scholar/regression")
SAFETY_STATE_KEYS = {
"cooldown_active",
"cooldown_reason",
"cooldown_reason_label",
"cooldown_until",
"cooldown_remaining_seconds",
"recommended_action",
"counters",
}
SAFETY_COUNTER_KEYS = {
"consecutive_blocked_runs",
"consecutive_network_runs",
"cooldown_entry_count",
"blocked_start_count",
"last_blocked_failure_count",
"last_network_failure_count",
"last_evaluated_run_id",
}
ACTIVE_RUN_STATUSES = {"running", "resolving"}
def login_user(client: TestClient, *, email: str, password: str) -> None:
bootstrap_response = client.get("/api/v1/auth/csrf")
@ -54,3 +78,93 @@ async def insert_user(
user_id = int(result.scalar_one())
await db_session.commit()
return user_id
def api_bootstrap_csrf_headers(client: TestClient) -> dict[str, str]:
bootstrap_response = client.get("/api/v1/auth/csrf")
assert bootstrap_response.status_code == 200
payload = bootstrap_response.json()["data"]
token = payload["csrf_token"]
assert isinstance(token, str) and token
return {"X-CSRF-Token": token}
def api_csrf_headers(client: TestClient) -> dict[str, str]:
me_response = client.get("/api/v1/auth/me")
assert me_response.status_code == 200
body = me_response.json()
token = body["data"]["csrf_token"]
assert isinstance(token, str) and token
return {"X-CSRF-Token": token}
def regression_fixture(name: str) -> str:
return (REGRESSION_FIXTURE_DIR / name).read_text(encoding="utf-8")
def assert_safety_state_contract(payload: dict[str, object]) -> None:
assert set(payload.keys()) == SAFETY_STATE_KEYS
counters = payload["counters"]
assert isinstance(counters, dict)
assert set(counters.keys()) == SAFETY_COUNTER_KEYS
async def wait_for_run_complete(
client: TestClient,
run_id: int,
*,
max_retries: int = 300,
poll_interval: float = 0.2,
) -> dict:
for _ in range(max_retries):
await asyncio.sleep(poll_interval)
r = client.get(f"/api/v1/runs/{run_id}")
assert r.status_code == 200
data = r.json()["data"]
if data["run"]["status"] not in ACTIVE_RUN_STATUSES:
return data
r = client.get(f"/api/v1/runs/{run_id}")
return r.json()["data"]
async def seed_publication_link_for_user(
db_session: AsyncSession,
*,
user_id: int,
scholar_id: str,
title: str,
fingerprint: str,
) -> tuple[int, int]:
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{"user_id": user_id, "scholar_id": scholar_id, "display_name": scholar_id},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 4)
RETURNING id
"""
),
{"fingerprint": fingerprint, "title_raw": title, "title_normalized": title.lower()},
)
publication_id = int(publication_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read)
VALUES (:scholar_profile_id, :publication_id, false)
"""
),
{"scholar_profile_id": scholar_profile_id, "publication_id": publication_id},
)
await db_session.commit()
return scholar_profile_id, publication_id

576
tests/integration/test_api_admin.py Normal file
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@ -0,0 +1,576 @@
from __future__ import annotations
import pytest
from fastapi.testclient import TestClient
from sqlalchemy import text
from sqlalchemy.ext.asyncio import AsyncSession
from app.main import app
from app.settings import settings
from tests.integration.helpers import (
api_bootstrap_csrf_headers,
api_csrf_headers,
insert_user,
login_user,
seed_publication_link_for_user,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_user_management_endpoints(db_session: AsyncSession) -> None:
admin_user_id = await insert_user(
db_session,
email="api-admin@example.com",
password="admin-password",
is_admin=True,
)
target_user_id = await insert_user(
db_session,
email="api-target@example.com",
password="target-password",
is_admin=False,
)
await insert_user(
db_session,
email="api-member@example.com",
password="member-password",
is_admin=False,
)
client = TestClient(app)
login_user(client, email="api-admin@example.com", password="admin-password")
headers = api_csrf_headers(client)
list_response = client.get("/api/v1/admin/users")
assert list_response.status_code == 200
users = list_response.json()["data"]["users"]
assert any(item["email"] == "api-target@example.com" for item in users)
create_response = client.post(
"/api/v1/admin/users",
json={
"email": "api-created@example.com",
"password": "created-password",
"is_admin": True,
},
headers=headers,
)
assert create_response.status_code == 201
created_user = create_response.json()["data"]
assert created_user["email"] == "api-created@example.com"
created_user_id = int(created_user["id"])
deactivate_response = client.patch(
f"/api/v1/admin/users/{target_user_id}/active",
json={"is_active": False},
headers=headers,
)
assert deactivate_response.status_code == 200
assert deactivate_response.json()["data"]["is_active"] is False
reactivate_response = client.patch(
f"/api/v1/admin/users/{target_user_id}/active",
json={"is_active": True},
headers=headers,
)
assert reactivate_response.status_code == 200
assert reactivate_response.json()["data"]["is_active"] is True
reset_response = client.post(
f"/api/v1/admin/users/{target_user_id}/reset-password",
json={"new_password": "target-password-updated"},
headers=headers,
)
assert reset_response.status_code == 200
assert "Password reset" in reset_response.json()["data"]["message"]
self_deactivate = client.patch(
f"/api/v1/admin/users/{admin_user_id}/active",
json={"is_active": False},
headers=headers,
)
assert self_deactivate.status_code == 400
assert self_deactivate.json()["error"]["code"] == "cannot_deactivate_self"
logout_response = client.post("/api/v1/auth/logout", headers=headers)
assert logout_response.status_code == 200
target_headers = api_bootstrap_csrf_headers(client)
target_login = client.post(
"/api/v1/auth/login",
json={"email": "api-target@example.com", "password": "target-password-updated"},
headers=target_headers,
)
assert target_login.status_code == 200
non_admin_headers = {"X-CSRF-Token": target_login.json()["data"]["csrf_token"]}
forbidden_response = client.get("/api/v1/admin/users")
assert forbidden_response.status_code == 403
assert forbidden_response.json()["error"]["code"] == "forbidden"
forbidden_create = client.post(
"/api/v1/admin/users",
json={
"email": "should-not-work@example.com",
"password": "password-123",
"is_admin": False,
},
headers=non_admin_headers,
)
assert forbidden_create.status_code == 403
created_exists = await db_session.execute(
text("SELECT COUNT(*) FROM users WHERE id = :user_id"),
{"user_id": created_user_id},
)
assert created_exists.scalar_one() == 1
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_scholar_http_settings_endpoints(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-admin-http@example.com",
password="admin-password",
is_admin=True,
)
await insert_user(
db_session,
email="api-member-http@example.com",
password="member-password",
is_admin=False,
)
previous_user_agent = settings.scholar_http_user_agent
previous_rotate = settings.scholar_http_rotate_user_agent
previous_accept_language = settings.scholar_http_accept_language
previous_cookie = settings.scholar_http_cookie
try:
client = TestClient(app)
login_user(client, email="api-admin-http@example.com", password="admin-password")
headers = api_csrf_headers(client)
read_response = client.get("/api/v1/admin/settings/scholar-http")
assert read_response.status_code == 200
update_response = client.put(
"/api/v1/admin/settings/scholar-http",
json={
"user_agent": "Mozilla/5.0 Test Runner",
"rotate_user_agent": False,
"accept_language": "en-US,en;q=0.8",
"cookie": "SID=test-cookie",
},
headers=headers,
)
assert update_response.status_code == 200
payload = update_response.json()["data"]
assert payload["user_agent"] == "Mozilla/5.0 Test Runner"
assert payload["cookie"] == "SID=test-cookie"
assert settings.scholar_http_user_agent == "Mozilla/5.0 Test Runner"
client.post("/api/v1/auth/logout", headers=headers)
login_user(client, email="api-member-http@example.com", password="member-password")
forbidden_response = client.get("/api/v1/admin/settings/scholar-http")
assert forbidden_response.status_code == 403
finally:
object.__setattr__(settings, "scholar_http_user_agent", previous_user_agent)
object.__setattr__(settings, "scholar_http_rotate_user_agent", previous_rotate)
object.__setattr__(settings, "scholar_http_accept_language", previous_accept_language)
object.__setattr__(settings, "scholar_http_cookie", previous_cookie)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_dbops_integrity_and_repair_flow(db_session: AsyncSession) -> None:
await insert_user(db_session, email="api-admin-dbops@example.com", password="admin-password", is_admin=True)
target_user_id = await insert_user(db_session, email="api-dbops-target@example.com", password="target-password")
_scholar_id, publication_id = await seed_publication_link_for_user(
db_session,
user_id=target_user_id,
scholar_id="dbopsTarget01",
title="DB Ops Target Paper",
fingerprint=f"{(target_user_id + 31):064x}",
)
client = TestClient(app)
login_user(client, email="api-admin-dbops@example.com", password="admin-password")
headers = api_csrf_headers(client)
integrity_response = client.get("/api/v1/admin/db/integrity")
assert integrity_response.status_code == 200
integrity_payload = integrity_response.json()["data"]
assert integrity_payload["status"] in {"ok", "warning", "failed"}
assert any(check["name"] == "missing_pdf_url" for check in integrity_payload["checks"])
repair_response = client.post(
"/api/v1/admin/db/repairs/publication-links",
json={"user_id": target_user_id, "dry_run": True},
headers=headers,
)
assert repair_response.status_code == 200
repair_data = repair_response.json()["data"]
assert repair_data["status"] == "completed"
assert bool(repair_data["summary"]["dry_run"]) is True
job_id = int(repair_data["job_id"])
jobs_response = client.get("/api/v1/admin/db/repair-jobs?limit=10")
assert jobs_response.status_code == 200
jobs = jobs_response.json()["data"]["jobs"]
assert any(int(job["id"]) == job_id for job in jobs)
pdf_queue_response = client.get("/api/v1/admin/db/pdf-queue?limit=20")
assert pdf_queue_response.status_code == 200
pdf_queue_payload = pdf_queue_response.json()["data"]
assert isinstance(pdf_queue_payload["items"], list)
assert int(pdf_queue_payload["page"]) == 1
assert int(pdf_queue_payload["page_size"]) == 20
assert int(pdf_queue_payload["total_count"]) >= 0
assert isinstance(pdf_queue_payload["has_next"], bool)
assert isinstance(pdf_queue_payload["has_prev"], bool)
page_two_response = client.get("/api/v1/admin/db/pdf-queue?page=2&page_size=1")
assert page_two_response.status_code == 200
page_two_payload = page_two_response.json()["data"]
assert int(page_two_payload["page"]) == 2
assert int(page_two_payload["page_size"]) == 1
assert page_two_payload["has_prev"] is True
untracked_response = client.get("/api/v1/admin/db/pdf-queue?limit=20&status=untracked")
assert untracked_response.status_code == 200
assert any(item["status"] == "untracked" for item in untracked_response.json()["data"]["items"])
link_count_result = await db_session.execute(
text("SELECT count(*) FROM scholar_publications WHERE publication_id = :publication_id"),
{"publication_id": publication_id},
)
assert int(link_count_result.scalar_one()) == 1
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_dbops_pdf_queue_requeue_endpoint(
db_session: AsyncSession,
monkeypatch: pytest.MonkeyPatch,
) -> None:
await insert_user(db_session, email="api-admin-pdf@example.com", password="admin-password", is_admin=True)
target_user_id = await insert_user(db_session, email="api-pdf-target@example.com", password="target-password")
_scholar_id, publication_id = await seed_publication_link_for_user(
db_session,
user_id=target_user_id,
scholar_id="dbopsPdf01",
title="PDF Queue Target",
fingerprint=f"{(target_user_id + 73):064x}",
)
monkeypatch.setattr(
"app.services.publications.pdf_queue.schedule_rows",
lambda **_kwargs: None,
)
client = TestClient(app)
login_user(client, email="api-admin-pdf@example.com", password="admin-password")
headers = api_csrf_headers(client)
first_response = client.post(
f"/api/v1/admin/db/pdf-queue/{publication_id}/requeue",
headers=headers,
)
assert first_response.status_code == 200
first_data = first_response.json()["data"]
assert first_data["publication_id"] == publication_id
assert first_data["queued"] is True
assert first_data["status"] == "queued"
second_response = client.post(
f"/api/v1/admin/db/pdf-queue/{publication_id}/requeue",
headers=headers,
)
assert second_response.status_code == 200
second_data = second_response.json()["data"]
assert second_data["queued"] is False
assert second_data["status"] == "blocked"
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_dbops_pdf_queue_requeue_all_endpoint(
db_session: AsyncSession,
monkeypatch: pytest.MonkeyPatch,
) -> None:
await insert_user(db_session, email="api-admin-pdf-all@example.com", password="admin-password", is_admin=True)
target_user_id = await insert_user(db_session, email="api-pdf-all-target@example.com", password="target-password")
_scholar_id, _publication_id = await seed_publication_link_for_user(
db_session,
user_id=target_user_id,
scholar_id="dbopsPdfAll01",
title="PDF Queue All Target",
fingerprint=f"{(target_user_id + 83):064x}",
)
monkeypatch.setattr(
"app.services.publications.pdf_queue.schedule_rows",
lambda **_kwargs: None,
)
client = TestClient(app)
login_user(client, email="api-admin-pdf-all@example.com", password="admin-password")
headers = api_csrf_headers(client)
response = client.post(
"/api/v1/admin/db/pdf-queue/requeue-all?limit=500",
headers=headers,
)
assert response.status_code == 200
payload = response.json()["data"]
assert int(payload["requested_count"]) >= 1
assert int(payload["queued_count"]) >= 1
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_dbops_forbidden_for_non_admin_and_validates_scope(db_session: AsyncSession) -> None:
await insert_user(db_session, email="api-admin-dbops2@example.com", password="admin-password", is_admin=True)
member_user_id = await insert_user(db_session, email="api-dbops-member@example.com", password="member-password")
client = TestClient(app)
login_user(client, email="api-dbops-member@example.com", password="member-password")
headers = api_csrf_headers(client)
forbidden_integrity = client.get("/api/v1/admin/db/integrity")
assert forbidden_integrity.status_code == 403
assert forbidden_integrity.json()["error"]["code"] == "forbidden"
forbidden_pdf_queue = client.get("/api/v1/admin/db/pdf-queue")
assert forbidden_pdf_queue.status_code == 403
assert forbidden_pdf_queue.json()["error"]["code"] == "forbidden"
forbidden_requeue = client.post(
"/api/v1/admin/db/pdf-queue/1/requeue",
headers=headers,
)
assert forbidden_requeue.status_code == 403
assert forbidden_requeue.json()["error"]["code"] == "forbidden"
forbidden_requeue_all = client.post(
"/api/v1/admin/db/pdf-queue/requeue-all?limit=100",
headers=headers,
)
assert forbidden_requeue_all.status_code == 403
assert forbidden_requeue_all.json()["error"]["code"] == "forbidden"
forbidden_repair = client.post(
"/api/v1/admin/db/repairs/publication-links",
json={"user_id": member_user_id, "dry_run": True},
headers=headers,
)
assert forbidden_repair.status_code == 403
assert forbidden_repair.json()["error"]["code"] == "forbidden"
forbidden_near_duplicate = client.post(
"/api/v1/admin/db/repairs/publication-near-duplicates",
json={"dry_run": True},
headers=headers,
)
assert forbidden_near_duplicate.status_code == 403
assert forbidden_near_duplicate.json()["error"]["code"] == "forbidden"
admin_headers = api_bootstrap_csrf_headers(client)
admin_login = client.post(
"/api/v1/auth/login",
json={"email": "api-admin-dbops2@example.com", "password": "admin-password"},
headers=admin_headers,
)
assert admin_login.status_code == 200
post_login_headers = {"X-CSRF-Token": admin_login.json()["data"]["csrf_token"]}
invalid_scope = client.post(
"/api/v1/admin/db/repairs/publication-links",
json={"user_id": member_user_id, "dry_run": True},
headers=post_login_headers,
)
assert invalid_scope.status_code == 400
assert invalid_scope.json()["error"]["code"] == "invalid_repair_scope"
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_dbops_all_users_apply_requires_confirmation(db_session: AsyncSession) -> None:
await insert_user(db_session, email="api-admin-dbops3@example.com", password="admin-password", is_admin=True)
first_user_id = await insert_user(db_session, email="api-dbops-a@example.com", password="user-password")
second_user_id = await insert_user(db_session, email="api-dbops-b@example.com", password="user-password")
await seed_publication_link_for_user(
db_session,
user_id=first_user_id,
scholar_id="dbopsAll01",
title="DB Ops All User Paper One",
fingerprint=f"{(first_user_id + 61):064x}",
)
await seed_publication_link_for_user(
db_session,
user_id=second_user_id,
scholar_id="dbopsAll02",
title="DB Ops All User Paper Two",
fingerprint=f"{(second_user_id + 71):064x}",
)
client = TestClient(app)
login_user(client, email="api-admin-dbops3@example.com", password="admin-password")
headers = api_csrf_headers(client)
missing_confirmation = client.post(
"/api/v1/admin/db/repairs/publication-links",
json={"scope_mode": "all_users", "dry_run": False},
headers=headers,
)
assert missing_confirmation.status_code == 422
assert "confirmation_text" in str(missing_confirmation.json())
apply_response = client.post(
"/api/v1/admin/db/repairs/publication-links",
json={
"scope_mode": "all_users",
"dry_run": False,
"confirmation_text": "REPAIR ALL USERS",
},
headers=headers,
)
assert apply_response.status_code == 200
apply_data = apply_response.json()["data"]
assert apply_data["status"] == "completed"
assert apply_data["scope"]["scope_mode"] == "all_users"
assert int(apply_data["summary"]["links_deleted"]) >= 2
remaining_links = await db_session.execute(text("SELECT count(*) FROM scholar_publications"))
assert int(remaining_links.scalar_one()) == 0
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_admin_dbops_near_duplicate_repair_scan_and_apply(
db_session: AsyncSession,
) -> None:
await insert_user(
db_session,
email="api-admin-near-dup@example.com",
password="admin-password",
is_admin=True,
)
user_id = await insert_user(
db_session,
email="api-near-dup-target@example.com",
password="user-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "nearDupScholar01",
"display_name": "Near Dup Target",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
first_pub = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, year, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 2014, 100)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 1201):064x}",
"title_raw": "Adam: A method for stochastic optimization",
"title_normalized": "adam a method for stochastic optimization",
},
)
first_publication_id = int(first_pub.scalar_one())
second_pub = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, year, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 2015, 10)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 1202):064x}",
"title_raw": "†œAdam: A method for stochastic optimization, †3rd Int. Conf. Learn. Represent.",
"title_normalized": "adam method for stochastic optimization",
},
)
second_publication_id = int(second_pub.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read)
VALUES (:scholar_profile_id, :first_publication_id, false),
(:scholar_profile_id, :second_publication_id, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"first_publication_id": first_publication_id,
"second_publication_id": second_publication_id,
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-admin-near-dup@example.com", password="admin-password")
headers = api_csrf_headers(client)
scan_response = client.post(
"/api/v1/admin/db/repairs/publication-near-duplicates",
json={"dry_run": True, "max_clusters": 20},
headers=headers,
)
assert scan_response.status_code == 200
scan_data = scan_response.json()["data"]
assert scan_data["status"] == "completed"
assert int(scan_data["summary"]["candidate_cluster_count"]) >= 1
assert len(scan_data["clusters"]) >= 1
selected_key = str(scan_data["clusters"][0]["cluster_key"])
missing_confirmation = client.post(
"/api/v1/admin/db/repairs/publication-near-duplicates",
json={"dry_run": False, "selected_cluster_keys": [selected_key]},
headers=headers,
)
assert missing_confirmation.status_code == 422
assert "confirmation_text" in str(missing_confirmation.json())
apply_response = client.post(
"/api/v1/admin/db/repairs/publication-near-duplicates",
json={
"dry_run": False,
"selected_cluster_keys": [selected_key],
"confirmation_text": "MERGE SELECTED DUPLICATES",
},
headers=headers,
)
assert apply_response.status_code == 200
apply_data = apply_response.json()["data"]
assert apply_data["status"] == "completed"
assert int(apply_data["summary"]["merged_publications"]) >= 1
remaining = await db_session.execute(
text(
"""
SELECT count(*)
FROM publications
WHERE id IN (:first_publication_id, :second_publication_id)
"""
),
{
"first_publication_id": first_publication_id,
"second_publication_id": second_publication_id,
},
)
assert int(remaining.scalar_one()) == 1

182
tests/integration/test_api_auth.py Normal file
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@ -0,0 +1,182 @@
from __future__ import annotations
import pytest
from fastapi.testclient import TestClient
from sqlalchemy.ext.asyncio import AsyncSession
from app.main import app
from tests.integration.helpers import (
api_bootstrap_csrf_headers,
insert_user,
login_user,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_me_requires_authentication() -> None:
client = TestClient(app)
response = client.get("/api/v1/auth/me")
assert response.status_code == 401
payload = response.json()
assert payload["error"]["code"] == "auth_required"
assert payload["error"]["message"] == "Authentication required."
assert "request_id" in payload["meta"]
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_envelope_contract_for_success_and_csrf_error() -> None:
client = TestClient(app)
success_response = client.get("/api/v1/auth/csrf")
assert success_response.status_code == 200
success_payload = success_response.json()
assert set(success_payload.keys()) == {"data", "meta"}
assert isinstance(success_payload["data"]["csrf_token"], str)
assert set(success_payload["meta"].keys()) == {"request_id"}
error_response = client.post(
"/api/v1/auth/login",
json={"email": "missing-csrf@example.com", "password": "irrelevant"},
)
assert error_response.status_code == 403
error_payload = error_response.json()
assert set(error_payload.keys()) == {"error", "meta"}
assert set(error_payload["error"].keys()) == {"code", "message", "details"}
assert error_payload["error"]["code"] == "csrf_invalid"
assert error_payload["error"]["details"] is None
assert set(error_payload["meta"].keys()) == {"request_id"}
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_csrf_bootstrap_returns_token_for_anonymous_and_authenticated(
db_session: AsyncSession,
) -> None:
await insert_user(
db_session,
email="api-bootstrap@example.com",
password="api-password",
)
client = TestClient(app)
anonymous_response = client.get("/api/v1/auth/csrf")
assert anonymous_response.status_code == 200
anonymous_payload = anonymous_response.json()["data"]
assert isinstance(anonymous_payload["csrf_token"], str)
assert anonymous_payload["authenticated"] is False
login_user(client, email="api-bootstrap@example.com", password="api-password")
authenticated_response = client.get("/api/v1/auth/csrf")
assert authenticated_response.status_code == 200
authenticated_payload = authenticated_response.json()["data"]
assert isinstance(authenticated_payload["csrf_token"], str)
assert authenticated_payload["authenticated"] is True
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_me_returns_user_and_csrf_token(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-me@example.com",
password="api-password",
)
client = TestClient(app)
login_user(client, email="api-me@example.com", password="api-password")
response = client.get("/api/v1/auth/me")
assert response.status_code == 200
payload = response.json()
assert payload["data"]["authenticated"] is True
assert payload["data"]["user"]["email"] == "api-me@example.com"
assert isinstance(payload["data"]["csrf_token"], str)
assert payload["meta"]["request_id"]
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_login_and_change_password_flow(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-login@example.com",
password="old-password",
)
client = TestClient(app)
missing_csrf = client.post(
"/api/v1/auth/login",
json={"email": "api-login@example.com", "password": "old-password"},
)
assert missing_csrf.status_code == 403
assert missing_csrf.json()["error"]["code"] == "csrf_missing"
login_headers = api_bootstrap_csrf_headers(client)
login_response = client.post(
"/api/v1/auth/login",
json={"email": "api-login@example.com", "password": "old-password"},
headers=login_headers,
)
assert login_response.status_code == 200
login_payload = login_response.json()["data"]
assert login_payload["authenticated"] is True
assert login_payload["user"]["email"] == "api-login@example.com"
assert isinstance(login_payload["csrf_token"], str)
bad_change_response = client.post(
"/api/v1/auth/change-password",
json={
"current_password": "not-correct",
"new_password": "new-password",
"confirm_password": "new-password",
},
headers={"X-CSRF-Token": login_payload["csrf_token"]},
)
assert bad_change_response.status_code == 400
assert bad_change_response.json()["error"]["code"] == "invalid_current_password"
change_response = client.post(
"/api/v1/auth/change-password",
json={
"current_password": "old-password",
"new_password": "new-password",
"confirm_password": "new-password",
},
headers={"X-CSRF-Token": login_payload["csrf_token"]},
)
assert change_response.status_code == 200
assert change_response.json()["data"]["message"] == "Password updated successfully."
logout_response = client.post(
"/api/v1/auth/logout",
headers={"X-CSRF-Token": login_payload["csrf_token"]},
)
assert logout_response.status_code == 200
relogin_headers = api_bootstrap_csrf_headers(client)
old_password_login = client.post(
"/api/v1/auth/login",
json={"email": "api-login@example.com", "password": "old-password"},
headers=relogin_headers,
)
assert old_password_login.status_code == 401
assert old_password_login.json()["error"]["code"] == "invalid_credentials"
fresh_headers = api_bootstrap_csrf_headers(client)
new_password_login = client.post(
"/api/v1/auth/login",
json={"email": "api-login@example.com", "password": "new-password"},
headers=fresh_headers,
)
assert new_password_login.status_code == 200
assert new_password_login.json()["data"]["authenticated"] is True

573
tests/integration/test_api_publications.py Normal file
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@ -0,0 +1,573 @@
from __future__ import annotations
import pytest
from fastapi.testclient import TestClient
from sqlalchemy import text
from sqlalchemy.ext.asyncio import AsyncSession
from app.main import app
from tests.integration.helpers import (
api_csrf_headers,
insert_user,
login_user,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_list_and_mark_read(db_session: AsyncSession) -> None:
user_id = await insert_user(
db_session,
email="api-pubs@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "abcDEF123456",
"display_name": "Publication Owner",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_a = await db_session.execute(
text(
"""
INSERT INTO publications (
fingerprint_sha256,
title_raw,
title_normalized,
citation_count,
pdf_url
)
VALUES (:fingerprint, :title_raw, :title_normalized, 10, :pdf_url)
RETURNING id
"""
),
{
"fingerprint": f"{user_id:064x}",
"title_raw": "Paper A",
"title_normalized": "paper a",
"pdf_url": "https://example.org/paper-a.pdf",
},
)
publication_a_id = int(publication_a.scalar_one())
publication_b = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 4)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 1):064x}",
"title_raw": "Paper B",
"title_normalized": "paper b",
},
)
publication_b_id = int(publication_b.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read)
VALUES
(:scholar_profile_id, :publication_a_id, false),
(:scholar_profile_id, :publication_b_id, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_a_id": publication_a_id,
"publication_b_id": publication_b_id,
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-pubs@example.com", password="api-password")
headers = api_csrf_headers(client)
list_response = client.get("/api/v1/publications?mode=all")
assert list_response.status_code == 200
data = list_response.json()["data"]
assert data["mode"] == "all"
assert data["favorite_only"] is False
assert data["total_count"] == 2
assert data["unread_count"] == 2
assert data["favorites_count"] == 0
assert data["latest_count"] == 0
assert data["new_count"] == data["latest_count"]
assert data["page"] == 1
assert data["page_size"] == 100
assert data["has_prev"] is False
assert data["has_next"] is False
assert isinstance(data["publications"], list)
assert len(data["publications"]) == 2
assert all(bool(item["is_favorite"]) is False for item in data["publications"])
pdf_urls = {item["title"]: item["pdf_url"] for item in data["publications"]}
assert pdf_urls["Paper A"] == "https://example.org/paper-a.pdf"
assert pdf_urls["Paper B"] is None
latest_response = client.get("/api/v1/publications?mode=latest")
assert latest_response.status_code == 200
latest_data = latest_response.json()["data"]
assert latest_data["mode"] == "latest"
assert latest_data["latest_count"] == 0
unread_response = client.get("/api/v1/publications?mode=unread")
assert unread_response.status_code == 200
unread_data = unread_response.json()["data"]
assert unread_data["mode"] == "unread"
assert unread_data["unread_count"] == 2
alias_response = client.get("/api/v1/publications?mode=new")
assert alias_response.status_code == 200
alias_data = alias_response.json()["data"]
assert alias_data["mode"] == "latest"
assert alias_data["latest_count"] == latest_data["latest_count"]
assert alias_data["publications"] == latest_data["publications"]
mark_selected_response = client.post(
"/api/v1/publications/mark-read",
json={
"selections": [
{
"scholar_profile_id": scholar_profile_id,
"publication_id": publication_a_id,
}
]
},
headers=headers,
)
assert mark_selected_response.status_code == 200
assert mark_selected_response.json()["data"]["requested_count"] == 1
assert mark_selected_response.json()["data"]["updated_count"] == 1
read_state = await db_session.execute(
text(
"""
SELECT publication_id, is_read
FROM scholar_publications
WHERE scholar_profile_id = :scholar_profile_id
ORDER BY publication_id
"""
),
{"scholar_profile_id": scholar_profile_id},
)
states = {int(row[0]): bool(row[1]) for row in read_state.all()}
assert states[publication_a_id] is True
assert states[publication_b_id] is False
mark_response = client.post("/api/v1/publications/mark-all-read", headers=headers)
assert mark_response.status_code == 200
assert mark_response.json()["data"]["updated_count"] == 1
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_list_supports_pagination(db_session: AsyncSession) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-paging@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "pagingScholar01",
"display_name": "Paging Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_ids: list[int] = []
for index in range(3):
created = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 1)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 500 + index):064x}",
"title_raw": f"Paged Paper {index}",
"title_normalized": f"paged paper {index}",
},
)
publication_ids.append(int(created.scalar_one()))
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read, is_favorite)
VALUES
(:scholar_profile_id, :publication_1, false, false),
(:scholar_profile_id, :publication_2, false, false),
(:scholar_profile_id, :publication_3, false, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_1": publication_ids[0],
"publication_2": publication_ids[1],
"publication_3": publication_ids[2],
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-pubs-paging@example.com", password="api-password")
first_page = client.get("/api/v1/publications?mode=all&page=1&page_size=2")
assert first_page.status_code == 200
first_data = first_page.json()["data"]
assert first_data["total_count"] == 3
assert first_data["page"] == 1
assert first_data["page_size"] == 2
assert first_data["has_prev"] is False
assert first_data["has_next"] is True
assert len(first_data["publications"]) == 2
second_page = client.get("/api/v1/publications?mode=all&page=2&page_size=2")
assert second_page.status_code == 200
second_data = second_page.json()["data"]
assert second_data["total_count"] == 3
assert second_data["page"] == 2
assert second_data["page_size"] == 2
assert second_data["has_prev"] is True
assert second_data["has_next"] is False
assert len(second_data["publications"]) == 1
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_search_pagination_uses_filtered_total_count(
db_session: AsyncSession,
) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-search-page@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "searchPagingScholar01",
"display_name": "Search Paging Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
titles = ["Alpha Optimization", "Alpha Learning", "Beta Methods"]
publication_ids: list[int] = []
for index, title in enumerate(titles):
created = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 1)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 900 + index):064x}",
"title_raw": title,
"title_normalized": title.lower(),
},
)
publication_ids.append(int(created.scalar_one()))
for publication_id in publication_ids:
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read, is_favorite)
VALUES (:scholar_profile_id, :publication_id, false, false)
"""
),
{"scholar_profile_id": scholar_profile_id, "publication_id": publication_id},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-pubs-search-page@example.com", password="api-password")
response = client.get("/api/v1/publications?mode=all&page=1&page_size=2&search=alpha")
assert response.status_code == 200
data = response.json()["data"]
assert int(data["total_count"]) == 2
assert data["has_next"] is False
assert len(data["publications"]) == 2
assert all("alpha" in str(item["title"]).lower() for item in data["publications"])
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_supports_sort_by_pdf_status(
db_session: AsyncSession,
) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-pdf-sort@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "pdfSortScholar01",
"display_name": "PDF Sort Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
resolved_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count, pdf_url)
VALUES (:fingerprint, :title_raw, :title_normalized, 1, :pdf_url)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 1300):064x}",
"title_raw": "Resolved PDF",
"title_normalized": "resolved pdf",
"pdf_url": "https://example.org/resolved.pdf",
},
)
resolved_publication_id = int(resolved_result.scalar_one())
queued_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 1)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 1301):064x}",
"title_raw": "Queued PDF",
"title_normalized": "queued pdf",
},
)
queued_publication_id = int(queued_result.scalar_one())
failed_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 1)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 1302):064x}",
"title_raw": "Failed PDF",
"title_normalized": "failed pdf",
},
)
failed_publication_id = int(failed_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read, is_favorite)
VALUES
(:scholar_profile_id, :resolved_publication_id, false, false),
(:scholar_profile_id, :queued_publication_id, false, false),
(:scholar_profile_id, :failed_publication_id, false, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"resolved_publication_id": resolved_publication_id,
"queued_publication_id": queued_publication_id,
"failed_publication_id": failed_publication_id,
},
)
await db_session.execute(
text(
"""
INSERT INTO publication_pdf_jobs (publication_id, status, attempt_count)
VALUES (:queued_publication_id, 'queued', 1),
(:failed_publication_id, 'failed', 2)
"""
),
{
"queued_publication_id": queued_publication_id,
"failed_publication_id": failed_publication_id,
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-pubs-pdf-sort@example.com", password="api-password")
response = client.get("/api/v1/publications?mode=all&sort_by=pdf_status&sort_dir=desc")
assert response.status_code == 200
publications = response.json()["data"]["publications"]
publication_ids = [int(item["publication_id"]) for item in publications]
assert publication_ids[0] == resolved_publication_id
assert publication_ids[-1] == failed_publication_id
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_favorite_toggle_and_filter(db_session: AsyncSession) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-favorites@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "favoriteScholar01",
"display_name": "Favorite Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_a_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 9)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 101):064x}",
"title_raw": "Favorite Target",
"title_normalized": "favorite target",
},
)
publication_a_id = int(publication_a_result.scalar_one())
publication_b_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 2)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 102):064x}",
"title_raw": "Not Favorite",
"title_normalized": "not favorite",
},
)
publication_b_id = int(publication_b_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read, is_favorite)
VALUES
(:scholar_profile_id, :publication_a_id, false, false),
(:scholar_profile_id, :publication_b_id, false, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_a_id": publication_a_id,
"publication_b_id": publication_b_id,
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-pubs-favorites@example.com", password="api-password")
headers = api_csrf_headers(client)
set_response = client.post(
f"/api/v1/publications/{publication_a_id}/favorite",
json={"scholar_profile_id": scholar_profile_id, "is_favorite": True},
headers=headers,
)
assert set_response.status_code == 200
set_data = set_response.json()["data"]
assert set_data["publication"]["publication_id"] == publication_a_id
assert set_data["publication"]["is_favorite"] is True
favorite_only_response = client.get("/api/v1/publications?mode=all&favorite_only=true")
assert favorite_only_response.status_code == 200
favorite_only_data = favorite_only_response.json()["data"]
assert favorite_only_data["favorite_only"] is True
assert favorite_only_data["favorites_count"] == 1
assert favorite_only_data["total_count"] == 1
assert len(favorite_only_data["publications"]) == 1
assert int(favorite_only_data["publications"][0]["publication_id"]) == publication_a_id
clear_response = client.post(
f"/api/v1/publications/{publication_a_id}/favorite",
json={"scholar_profile_id": scholar_profile_id, "is_favorite": False},
headers=headers,
)
assert clear_response.status_code == 200
clear_data = clear_response.json()["data"]
assert clear_data["publication"]["publication_id"] == publication_a_id
assert clear_data["publication"]["is_favorite"] is False
favorite_only_after_clear_response = client.get("/api/v1/publications?mode=all&favorite_only=true")
assert favorite_only_after_clear_response.status_code == 200
favorite_only_after_clear_data = favorite_only_after_clear_response.json()["data"]
assert favorite_only_after_clear_data["favorites_count"] == 0
assert favorite_only_after_clear_data["total_count"] == 0
assert favorite_only_after_clear_data["publications"] == []
favorite_state_result = await db_session.execute(
text(
"""
SELECT is_favorite
FROM scholar_publications
WHERE scholar_profile_id = :scholar_profile_id
AND publication_id = :publication_id
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_id": publication_a_id,
},
)
assert bool(favorite_state_result.scalar_one()) is False

337
tests/integration/test_api_publications_advanced.py Normal file
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@ -0,0 +1,337 @@
from __future__ import annotations
import pytest
from fastapi.testclient import TestClient
from sqlalchemy import text
from sqlalchemy.ext.asyncio import AsyncSession
from app.main import app
from app.services.publications.types import PublicationListItem
from tests.integration.helpers import (
api_csrf_headers,
insert_user,
login_user,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_list_schedules_background_enrichment(
db_session: AsyncSession,
monkeypatch: pytest.MonkeyPatch,
) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-bg@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "background111",
"display_name": "Background Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 3)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 17):064x}",
"title_raw": "Background Target",
"title_normalized": "background target",
},
)
publication_id = int(publication_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read)
VALUES (:scholar_profile_id, :publication_id, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_id": publication_id,
},
)
await db_session.commit()
async def _fake_schedule(db_session, *, user_id: int, request_email: str | None, items, max_items: int):
assert db_session is not None
assert user_id > 0
assert request_email == "api-pubs-bg@example.com"
assert int(max_items) > 0
assert any(int(item.publication_id) == publication_id for item in items)
return 1
monkeypatch.setattr(
"app.services.publications.application.schedule_missing_pdf_enrichment_for_user",
_fake_schedule,
)
client = TestClient(app)
login_user(client, email="api-pubs-bg@example.com", password="api-password")
response = client.get("/api/v1/publications?mode=all")
assert response.status_code == 200
data = response.json()["data"]
assert len(data["publications"]) == 1
assert int(data["publications"][0]["publication_id"]) == publication_id
assert data["publications"][0]["pdf_url"] is None
assert data["publications"][0]["pdf_status"] in {"untracked", "queued", "running", "failed"}
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publication_retry_pdf_queues_resolution_job(
db_session: AsyncSession,
monkeypatch: pytest.MonkeyPatch,
) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-retry@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "retryScholar01",
"display_name": "Retry Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 7)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 9):064x}",
"title_raw": "Retry Target",
"title_normalized": "retry target",
},
)
publication_id = int(publication_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read)
VALUES (:scholar_profile_id, :publication_id, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_id": publication_id,
},
)
await db_session.commit()
async def _fake_retry_scheduler(db_session, *, user_id: int, request_email: str | None, item: PublicationListItem):
assert db_session is not None
assert user_id > 0
assert request_email == "api-pubs-retry@example.com"
assert int(item.publication_id) == publication_id
return True
monkeypatch.setattr(
"app.services.publications.application.schedule_retry_pdf_enrichment_for_row",
_fake_retry_scheduler,
)
async def _fake_hydrate(db_session, *, items: list[PublicationListItem]):
assert db_session is not None
assert len(items) == 1
item = items[0]
return [
PublicationListItem(
publication_id=item.publication_id,
scholar_profile_id=item.scholar_profile_id,
scholar_label=item.scholar_label,
title=item.title,
year=item.year,
citation_count=item.citation_count,
venue_text=item.venue_text,
pub_url=item.pub_url,
pdf_url=item.pdf_url,
is_read=item.is_read,
first_seen_at=item.first_seen_at,
is_new_in_latest_run=item.is_new_in_latest_run,
pdf_status="queued",
pdf_attempt_count=1,
pdf_failure_reason="no_pdf_found",
pdf_failure_detail="no_pdf_found",
)
]
monkeypatch.setattr(
"app.services.publications.application.hydrate_pdf_enrichment_state",
_fake_hydrate,
)
client = TestClient(app)
login_user(client, email="api-pubs-retry@example.com", password="api-password")
headers = api_csrf_headers(client)
response = client.post(
f"/api/v1/publications/{publication_id}/retry-pdf",
json={"scholar_profile_id": scholar_profile_id},
headers=headers,
)
assert response.status_code == 200
payload = response.json()["data"]
assert payload["queued"] is True
assert payload["resolved_pdf"] is False
assert payload["publication"]["publication_id"] == publication_id
assert payload["publication"]["pdf_url"] is None
assert payload["publication"]["pdf_status"] == "queued"
assert payload["publication"]["pdf_attempt_count"] == 1
assert payload["publication"]["pdf_failure_reason"] == "no_pdf_found"
stored = await db_session.execute(
text("SELECT pdf_url FROM publications WHERE id = :publication_id"),
{"publication_id": publication_id},
)
stored_pdf_url = stored.scalar_one()
assert stored_pdf_url is None
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_publications_unread_and_latest_modes_can_diverge(
db_session: AsyncSession,
) -> None:
user_id = await insert_user(
db_session,
email="api-pubs-mismatch@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "mismatchScholar01",
"display_name": "Mismatch Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
older_run_result = await db_session.execute(
text(
"""
INSERT INTO crawl_runs (user_id, trigger_type, status, scholar_count, new_pub_count)
VALUES (:user_id, 'manual', 'success', 1, 1)
RETURNING id
"""
),
{"user_id": user_id},
)
older_run_id = int(older_run_result.scalar_one())
latest_run_result = await db_session.execute(
text(
"""
INSERT INTO crawl_runs (user_id, trigger_type, status, scholar_count, new_pub_count)
VALUES (:user_id, 'scheduled', 'success', 1, 0)
RETURNING id
"""
),
{"user_id": user_id},
)
latest_run_id = int(latest_run_result.scalar_one())
assert latest_run_id > older_run_id
publication_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 12)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 99):064x}",
"title_raw": "Unread But Not Latest",
"title_normalized": "unread but not latest",
},
)
publication_id = int(publication_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (
scholar_profile_id,
publication_id,
is_read,
first_seen_run_id
)
VALUES (:scholar_profile_id, :publication_id, false, :first_seen_run_id)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_id": publication_id,
"first_seen_run_id": older_run_id,
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-pubs-mismatch@example.com", password="api-password")
unread_response = client.get("/api/v1/publications?mode=unread")
assert unread_response.status_code == 200
unread_data = unread_response.json()["data"]
assert unread_data["mode"] == "unread"
assert unread_data["unread_count"] == 1
assert unread_data["latest_count"] == 0
assert unread_data["new_count"] == 0
assert len(unread_data["publications"]) == 1
assert int(unread_data["publications"][0]["publication_id"]) == publication_id
assert unread_data["publications"][0]["is_new_in_latest_run"] is False
latest_response = client.get("/api/v1/publications?mode=latest")
assert latest_response.status_code == 200
latest_data = latest_response.json()["data"]
assert latest_data["mode"] == "latest"
assert latest_data["latest_count"] == 0
assert len(latest_data["publications"]) == 0
alias_response = client.get("/api/v1/publications?mode=new")
assert alias_response.status_code == 200
alias_data = alias_response.json()["data"]
assert alias_data["mode"] == "latest"
assert alias_data["latest_count"] == latest_data["latest_count"]
assert alias_data["publications"] == latest_data["publications"]

499
tests/integration/test_api_runs.py Normal file
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@ -0,0 +1,499 @@
from __future__ import annotations
import pytest
from fastapi.testclient import TestClient
from sqlalchemy import text
from sqlalchemy.ext.asyncio import AsyncSession
from app.api.runtime_deps import get_scholar_source
from app.main import app
from app.services.scholar.source import FetchResult
from app.settings import settings
from tests.integration.helpers import (
api_csrf_headers,
assert_safety_state_contract,
insert_user,
login_user,
regression_fixture,
wait_for_run_complete,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_manual_run_skips_unchanged_initial_page_for_scholar(
db_session: AsyncSession,
) -> None:
await insert_user(
db_session,
email="api-skip-unchanged@example.com",
password="api-password",
)
profile_html = """
<html>
<head>
<meta property="og:image" content="https://images.example.com/skip.png" />
</head>
<body>
<div id="gsc_prf_in">Skip Candidate</div>
<span id="gsc_a_nn">Articles 1-1</span>
<table>
<tbody id="gsc_a_b">
<tr class="gsc_a_tr">
<td class="gsc_a_t">
<a class="gsc_a_at" href="/citations?view_op=view_citation&citation_for_view=abcDEF123456:xyz123">Stable Paper</a>
<div class="gs_gray">A Author</div>
<div class="gs_gray">Stable Venue</div>
</td>
<td class="gsc_a_c"><a class="gsc_a_ac">5</a></td>
<td class="gsc_a_y"><span class="gsc_a_h">2024</span></td>
</tr>
</tbody>
</table>
</body>
</html>
"""
class StubScholarSource:
async def fetch_profile_html(self, scholar_id: str) -> FetchResult:
assert scholar_id == "abcDEF123456"
return FetchResult(
requested_url="https://scholar.google.com/citations?hl=en&user=abcDEF123456",
status_code=200,
final_url="https://scholar.google.com/citations?hl=en&user=abcDEF123456",
body=profile_html,
error=None,
)
async def fetch_profile_page_html(
self,
scholar_id: str,
*,
cstart: int,
pagesize: int,
) -> FetchResult:
assert scholar_id == "abcDEF123456"
assert cstart == 0
assert pagesize == settings.ingestion_page_size
return FetchResult(
requested_url="https://scholar.google.com/citations?hl=en&user=abcDEF123456",
status_code=200,
final_url="https://scholar.google.com/citations?hl=en&user=abcDEF123456",
body=profile_html,
error=None,
)
app.dependency_overrides[get_scholar_source] = lambda: StubScholarSource()
try:
with TestClient(app) as client:
login_user(client, email="api-skip-unchanged@example.com", password="api-password")
headers = api_csrf_headers(client)
create_response = client.post(
"/api/v1/scholars",
json={"scholar_id": "abcDEF123456"},
headers=headers,
)
assert create_response.status_code == 201
first_run_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "skip-unchanged-run-001"},
)
assert first_run_response.status_code == 200
first_run_id = int(first_run_response.json()["data"]["run_id"])
first_detail_data = await wait_for_run_complete(client, first_run_id)
first_results = first_detail_data["scholar_results"]
assert len(first_results) == 1
assert first_results[0]["state_reason"] != "no_change_initial_page_signature"
second_run_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "skip-unchanged-run-002"},
)
assert second_run_response.status_code == 200
second_run_id = int(second_run_response.json()["data"]["run_id"])
second_detail_data = await wait_for_run_complete(client, second_run_id)
second_results = second_detail_data["scholar_results"]
assert len(second_results) == 1
assert second_results[0]["state_reason"] == "no_change_initial_page_signature"
assert second_results[0]["publication_count"] == 0
assert second_results[0]["outcome"] == "success"
finally:
app.dependency_overrides.pop(get_scholar_source, None)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_runs_manual_and_queue_actions(db_session: AsyncSession) -> None:
user_id = await insert_user(
db_session,
email="api-runs@example.com",
password="api-password",
)
client = TestClient(app)
login_user(client, email="api-runs@example.com", password="api-password")
headers = api_csrf_headers(client)
run_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "manual-run-0001"},
)
assert run_response.status_code == 200
run_payload = run_response.json()["data"]
assert "run_id" in run_payload
assert run_payload["status"] in {"running", "resolving", "success", "partial_failure", "failed"}
assert run_payload["reused_existing_run"] is False
assert run_payload["idempotency_key"] == "manual-run-0001"
assert_safety_state_contract(run_payload["safety_state"])
run_id = int(run_payload["run_id"])
stored_key = await db_session.execute(
text("SELECT idempotency_key FROM crawl_runs WHERE id = :run_id"),
{"run_id": run_id},
)
assert stored_key.scalar_one() == "manual-run-0001"
replay_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "manual-run-0001"},
)
assert replay_response.status_code in {200, 409}
if replay_response.status_code == 200:
replay_payload = replay_response.json()["data"]
assert replay_payload["run_id"] == run_payload["run_id"]
assert replay_payload["reused_existing_run"] is True
assert_safety_state_contract(replay_payload["safety_state"])
else:
replay_error = replay_response.json()["error"]
assert replay_error["code"] == "run_in_progress"
runs_response = client.get("/api/v1/runs")
assert runs_response.status_code == 200
assert len(runs_response.json()["data"]["runs"]) >= 1
assert_safety_state_contract(runs_response.json()["data"]["safety_state"])
run_detail_response = client.get(f"/api/v1/runs/{run_id}")
assert run_detail_response.status_code == 200
detail_payload = run_detail_response.json()["data"]
assert "summary" in detail_payload
assert isinstance(detail_payload["scholar_results"], list)
assert_safety_state_contract(detail_payload["safety_state"])
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "abcDEF123456",
"display_name": "Queue Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
queue_result = await db_session.execute(
text(
"""
INSERT INTO ingestion_queue_items (
user_id,
scholar_profile_id,
resume_cstart,
reason,
status,
attempt_count,
next_attempt_dt,
dropped_reason,
dropped_at
)
VALUES (
:user_id,
:scholar_profile_id,
7,
'dropped',
'dropped',
2,
NOW(),
'manual_drop',
NOW()
)
RETURNING id
"""
),
{"user_id": user_id, "scholar_profile_id": scholar_profile_id},
)
queue_item_id = int(queue_result.scalar_one())
await db_session.commit()
queue_list_response = client.get("/api/v1/runs/queue/items")
assert queue_list_response.status_code == 200
assert any(int(item["id"]) == queue_item_id for item in queue_list_response.json()["data"]["queue_items"])
retry_response = client.post(f"/api/v1/runs/queue/{queue_item_id}/retry", headers=headers)
assert retry_response.status_code == 200
assert retry_response.json()["data"]["status"] == "queued"
retry_again_response = client.post(
f"/api/v1/runs/queue/{queue_item_id}/retry",
headers=headers,
)
assert retry_again_response.status_code == 409
assert retry_again_response.json()["error"]["code"] == "queue_item_already_queued"
drop_response = client.post(f"/api/v1/runs/queue/{queue_item_id}/drop", headers=headers)
assert drop_response.status_code == 200
assert drop_response.json()["data"]["status"] == "dropped"
clear_response = client.request(
"DELETE",
f"/api/v1/runs/queue/{queue_item_id}",
headers=headers,
)
assert clear_response.status_code == 200
assert clear_response.json()["data"]["status"] == "cleared"
assert clear_response.json()["data"]["message"] == "Queue item cleared."
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_manual_run_can_be_disabled_by_policy(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-runs-policy@example.com",
password="api-password",
)
client = TestClient(app)
login_user(client, email="api-runs-policy@example.com", password="api-password")
headers = api_csrf_headers(client)
previous_manual_allowed = settings.ingestion_manual_run_allowed
object.__setattr__(settings, "ingestion_manual_run_allowed", False)
try:
response = client.post("/api/v1/runs/manual", headers=headers)
assert response.status_code == 403
payload = response.json()
assert payload["error"]["code"] == "manual_runs_disabled"
assert payload["error"]["details"]["policy"]["manual_run_allowed"] is False
assert payload["error"]["details"]["safety_state"]["cooldown_active"] is False
finally:
object.__setattr__(settings, "ingestion_manual_run_allowed", previous_manual_allowed)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_manual_run_enforces_scrape_safety_cooldown(db_session: AsyncSession) -> None:
user_id = await insert_user(
db_session,
email="api-runs-safety@example.com",
password="api-password",
)
await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
"""
),
{
"user_id": user_id,
"scholar_id": "A1B2C3D4E5F6",
"display_name": "Safety Probe",
},
)
await db_session.commit()
blocked_fixture = regression_fixture("profile_AAAAAAAAAAAA.html")
class BlockedScholarSource:
async def fetch_profile_page_html(
self,
scholar_id: str,
*,
cstart: int,
pagesize: int,
) -> FetchResult:
_ = (scholar_id, cstart, pagesize)
return FetchResult(
requested_url="https://scholar.google.com/citations?hl=en&user=A1B2C3D4E5F6",
status_code=200,
final_url=(
"https://accounts.google.com/v3/signin/identifier"
"?continue=https%3A%2F%2Fscholar.google.com%2Fcitations"
),
body=blocked_fixture,
error=None,
)
async def fetch_profile_html(self, scholar_id: str) -> FetchResult:
_ = scholar_id
return await self.fetch_profile_page_html(
"A1B2C3D4E5F6",
cstart=0,
pagesize=settings.ingestion_page_size,
)
app.dependency_overrides[get_scholar_source] = lambda: BlockedScholarSource()
previous_blocked_cooldown_seconds = settings.ingestion_safety_cooldown_blocked_seconds
object.__setattr__(settings, "ingestion_safety_cooldown_blocked_seconds", 600)
try:
with TestClient(app) as client:
login_user(client, email="api-runs-safety@example.com", password="api-password")
headers = api_csrf_headers(client)
preflight_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "safety-cooldown-run-1"},
)
assert preflight_response.status_code == 429
preflight_payload = preflight_response.json()
assert preflight_payload["error"]["code"] == "scrape_cooldown_active"
preflight_state = preflight_payload["error"]["details"]["safety_state"]
assert_safety_state_contract(preflight_state)
assert preflight_state["cooldown_active"] is True
settings_response = client.get("/api/v1/settings")
assert settings_response.status_code == 200
safety_state = settings_response.json()["data"]["safety_state"]
assert_safety_state_contract(safety_state)
assert safety_state["cooldown_active"] is True
assert safety_state["cooldown_reason"] == "blocked_failure_threshold_exceeded"
assert int(safety_state["cooldown_remaining_seconds"]) > 0
assert int(safety_state["counters"]["cooldown_entry_count"]) >= 1
blocked_start_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "safety-cooldown-run-2"},
)
assert blocked_start_response.status_code == 429
blocked_payload = blocked_start_response.json()
assert blocked_payload["error"]["code"] == "scrape_cooldown_active"
blocked_state = blocked_payload["error"]["details"]["safety_state"]
assert_safety_state_contract(blocked_state)
assert blocked_state["cooldown_active"] is True
assert blocked_state["cooldown_reason"] == "blocked_failure_threshold_exceeded"
assert int(blocked_state["counters"]["blocked_start_count"]) >= 1
runs_response = client.get("/api/v1/runs")
assert runs_response.status_code == 200
assert_safety_state_contract(runs_response.json()["data"]["safety_state"])
assert runs_response.json()["data"]["safety_state"]["cooldown_active"] is True
finally:
object.__setattr__(settings, "ingestion_safety_cooldown_blocked_seconds", previous_blocked_cooldown_seconds)
app.dependency_overrides.pop(get_scholar_source, None)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_manual_run_enforces_network_failure_safety_cooldown(
db_session: AsyncSession,
) -> None:
user_id = await insert_user(
db_session,
email="api-runs-safety-network@example.com",
password="api-password",
)
await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
"""
),
{
"user_id": user_id,
"scholar_id": "NNN111NNN111",
"display_name": "Network Safety Probe",
},
)
await db_session.commit()
class NetworkFailureScholarSource:
async def fetch_profile_page_html(
self,
scholar_id: str,
*,
cstart: int,
pagesize: int,
) -> FetchResult:
_ = (scholar_id, cstart, pagesize)
return FetchResult(
requested_url="https://scholar.google.com/citations?hl=en&user=NNN111NNN111",
status_code=None,
final_url=None,
body="",
error="timed out",
)
async def fetch_profile_html(self, scholar_id: str) -> FetchResult:
_ = scholar_id
return await self.fetch_profile_page_html(
"NNN111NNN111",
cstart=0,
pagesize=settings.ingestion_page_size,
)
app.dependency_overrides[get_scholar_source] = lambda: NetworkFailureScholarSource()
previous_network_threshold = settings.ingestion_alert_network_failure_threshold
previous_network_cooldown_seconds = settings.ingestion_safety_cooldown_network_seconds
previous_network_retries = settings.ingestion_network_error_retries
previous_retry_backoff = settings.ingestion_retry_backoff_seconds
object.__setattr__(settings, "ingestion_alert_network_failure_threshold", 1)
object.__setattr__(settings, "ingestion_safety_cooldown_network_seconds", 600)
object.__setattr__(settings, "ingestion_network_error_retries", 0)
object.__setattr__(settings, "ingestion_retry_backoff_seconds", 0.0)
try:
with TestClient(app) as client:
login_user(client, email="api-runs-safety-network@example.com", password="api-password")
headers = api_csrf_headers(client)
first_run_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "safety-network-cooldown-run-1"},
)
assert first_run_response.status_code == 200
first_run_id = int(first_run_response.json()["data"]["run_id"])
await wait_for_run_complete(client, first_run_id)
settings_response = client.get("/api/v1/settings")
assert settings_response.status_code == 200
safety_state = settings_response.json()["data"]["safety_state"]
assert_safety_state_contract(safety_state)
assert safety_state["cooldown_active"] is True
assert safety_state["cooldown_reason"] == "network_failure_threshold_exceeded"
assert int(safety_state["cooldown_remaining_seconds"]) > 0
assert int(safety_state["counters"]["last_network_failure_count"]) >= 1
blocked_start_response = client.post(
"/api/v1/runs/manual",
headers={**headers, "Idempotency-Key": "safety-network-cooldown-run-2"},
)
assert blocked_start_response.status_code == 429
blocked_payload = blocked_start_response.json()
assert blocked_payload["error"]["code"] == "scrape_cooldown_active"
blocked_state = blocked_payload["error"]["details"]["safety_state"]
assert_safety_state_contract(blocked_state)
assert blocked_state["cooldown_active"] is True
assert blocked_state["cooldown_reason"] == "network_failure_threshold_exceeded"
assert int(blocked_state["counters"]["blocked_start_count"]) >= 1
finally:
object.__setattr__(settings, "ingestion_alert_network_failure_threshold", previous_network_threshold)
object.__setattr__(settings, "ingestion_safety_cooldown_network_seconds", previous_network_cooldown_seconds)
object.__setattr__(settings, "ingestion_network_error_retries", previous_network_retries)
object.__setattr__(settings, "ingestion_retry_backoff_seconds", previous_retry_backoff)
app.dependency_overrides.pop(get_scholar_source, None)

370
tests/integration/test_api_scholars.py Normal file
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@ -0,0 +1,370 @@
from __future__ import annotations
from pathlib import Path
import pytest
from fastapi.testclient import TestClient
from sqlalchemy import text
from sqlalchemy.ext.asyncio import AsyncSession
from app.api.runtime_deps import get_scholar_source
from app.main import app
from app.services.scholar.source import FetchResult
from app.settings import settings
from tests.integration.helpers import (
api_csrf_headers,
insert_user,
login_user,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_scholars_crud_flow(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-scholars@example.com",
password="api-password",
)
client = TestClient(app)
login_user(client, email="api-scholars@example.com", password="api-password")
headers = api_csrf_headers(client)
missing_csrf = client.post(
"/api/v1/scholars",
json={"scholar_id": "abcDEF123456"},
)
assert missing_csrf.status_code == 403
assert missing_csrf.json()["error"]["code"] == "csrf_invalid"
create_response = client.post(
"/api/v1/scholars",
json={"scholar_id": "abcDEF123456"},
headers=headers,
)
assert create_response.status_code == 201
created = create_response.json()["data"]
assert created["scholar_id"] == "abcDEF123456"
scholar_profile_id = int(created["id"])
list_response = client.get("/api/v1/scholars")
assert list_response.status_code == 200
scholars = list_response.json()["data"]["scholars"]
assert any(int(item["id"]) == scholar_profile_id for item in scholars)
toggle_response = client.patch(
f"/api/v1/scholars/{scholar_profile_id}/toggle",
headers=headers,
)
assert toggle_response.status_code == 200
assert toggle_response.json()["data"]["is_enabled"] is False
delete_response = client.delete(
f"/api/v1/scholars/{scholar_profile_id}",
headers=headers,
)
assert delete_response.status_code == 200
assert delete_response.json()["data"]["message"] == "Scholar deleted."
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_scholars_search_and_profile_image_management(
db_session: AsyncSession,
tmp_path: Path,
) -> None:
await insert_user(
db_session,
email="api-scholar-images@example.com",
password="api-password",
)
class StubScholarSource:
async def fetch_profile_html(self, scholar_id: str) -> FetchResult:
assert scholar_id == "abcDEF123456"
return FetchResult(
requested_url="https://scholar.google.com/citations?hl=en&user=abcDEF123456",
status_code=200,
final_url="https://scholar.google.com/citations?hl=en&user=abcDEF123456",
body=(
"<html><head>"
'<meta property="og:image" content="https://images.example.com/ada.png" />'
"</head><body>"
'<div id="gsc_prf_in">Ada Lovelace</div>'
"</body></html>"
),
error=None,
)
async def fetch_author_search_html(self, query: str, *, start: int) -> FetchResult:
assert query == "Ada Lovelace"
assert start == 0
return FetchResult(
requested_url="https://scholar.google.com/citations?hl=en&view_op=search_authors&mauthors=ada",
status_code=200,
final_url="https://scholar.google.com/citations?hl=en&view_op=search_authors&mauthors=ada",
body=(
'<div class="gsc_1usr">'
'<img src="/citations/images/avatar_scholar_256.png" />'
'<a class="gs_ai_name" href="/citations?hl=en&user=abcDEF123456">Ada Lovelace</a>'
'<div class="gs_ai_aff">Analytical Engine</div>'
'<div class="gs_ai_eml">Verified email at computing.example</div>'
'<div class="gs_ai_cby">Cited by 42</div>'
'<a class="gs_ai_one_int">Mathematics</a>'
"</div>"
),
error=None,
)
previous_upload_dir = settings.scholar_image_upload_dir
previous_upload_max_bytes = settings.scholar_image_upload_max_bytes
previous_queue_enabled = settings.ingestion_continuation_queue_enabled
app.dependency_overrides[get_scholar_source] = lambda: StubScholarSource()
object.__setattr__(settings, "scholar_image_upload_dir", str(tmp_path / "scholar_images"))
object.__setattr__(settings, "scholar_image_upload_max_bytes", 1_000_000)
object.__setattr__(settings, "ingestion_continuation_queue_enabled", False)
try:
client = TestClient(app)
login_user(client, email="api-scholar-images@example.com", password="api-password")
headers = api_csrf_headers(client)
search_response = client.get("/api/v1/scholars/search", params={"query": "Ada Lovelace", "limit": 5})
assert search_response.status_code == 200
search_payload = search_response.json()["data"]
assert search_payload["state"] == "ok"
assert len(search_payload["candidates"]) == 1
candidate = search_payload["candidates"][0]
assert candidate["scholar_id"] == "abcDEF123456"
assert candidate["profile_image_url"] == "https://scholar.google.com/citations/images/avatar_scholar_256.png"
create_response = client.post(
"/api/v1/scholars",
json={
"scholar_id": candidate["scholar_id"],
},
headers=headers,
)
assert create_response.status_code == 201
created = create_response.json()["data"]
scholar_profile_id = int(created["id"])
assert created["profile_image_source"] == "scraped"
assert created["profile_image_url"] == "https://images.example.com/ada.png"
set_url_response = client.put(
f"/api/v1/scholars/{scholar_profile_id}/image/url",
json={"image_url": "https://cdn.example.com/custom-avatar.png"},
headers=headers,
)
assert set_url_response.status_code == 200
set_url_data = set_url_response.json()["data"]
assert set_url_data["profile_image_source"] == "override"
assert set_url_data["profile_image_url"] == "https://cdn.example.com/custom-avatar.png"
uploaded_bytes = b"\\x89PNG\\r\\n\\x1a\\n\\x00\\x00\\x00\\rIHDR\\x00\\x00\\x00\\x01\\x00\\x00\\x00\\x01"
upload_response = client.post(
f"/api/v1/scholars/{scholar_profile_id}/image/upload",
files={"image": ("avatar.png", uploaded_bytes, "image/png")},
headers=headers,
)
assert upload_response.status_code == 200
upload_data = upload_response.json()["data"]
assert upload_data["profile_image_source"] == "upload"
assert upload_data["profile_image_url"] == f"/scholar-images/{scholar_profile_id}/upload"
uploaded_image_response = client.get(f"/scholar-images/{scholar_profile_id}/upload")
assert uploaded_image_response.status_code == 200
assert uploaded_image_response.headers["content-type"].startswith("image/png")
assert uploaded_image_response.content == uploaded_bytes
clear_response = client.delete(
f"/api/v1/scholars/{scholar_profile_id}/image",
headers=headers,
)
assert clear_response.status_code == 200
clear_data = clear_response.json()["data"]
assert clear_data["profile_image_source"] == "scraped"
assert clear_data["profile_image_url"] == "https://images.example.com/ada.png"
finally:
app.dependency_overrides.pop(get_scholar_source, None)
object.__setattr__(settings, "scholar_image_upload_dir", previous_upload_dir)
object.__setattr__(
settings,
"scholar_image_upload_max_bytes",
previous_upload_max_bytes,
)
object.__setattr__(settings, "ingestion_continuation_queue_enabled", previous_queue_enabled)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_scholar_import_export_round_trip(
db_session: AsyncSession,
) -> None:
user_id = await insert_user(
db_session,
email="api-import-export@example.com",
password="api-password",
)
scholar_result = await db_session.execute(
text(
"""
INSERT INTO scholar_profiles (user_id, scholar_id, display_name, is_enabled)
VALUES (:user_id, :scholar_id, :display_name, true)
RETURNING id
"""
),
{
"user_id": user_id,
"scholar_id": "abcDEF123456",
"display_name": "Existing Scholar",
},
)
scholar_profile_id = int(scholar_result.scalar_one())
publication_result = await db_session.execute(
text(
"""
INSERT INTO publications (fingerprint_sha256, title_raw, title_normalized, citation_count)
VALUES (:fingerprint, :title_raw, :title_normalized, 1)
RETURNING id
"""
),
{
"fingerprint": f"{(user_id + 500):064x}",
"title_raw": "Existing Publication",
"title_normalized": "existingpublication",
},
)
publication_id = int(publication_result.scalar_one())
await db_session.execute(
text(
"""
INSERT INTO scholar_publications (scholar_profile_id, publication_id, is_read)
VALUES (:scholar_profile_id, :publication_id, false)
"""
),
{
"scholar_profile_id": scholar_profile_id,
"publication_id": publication_id,
},
)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-import-export@example.com", password="api-password")
headers = api_csrf_headers(client)
export_response = client.get("/api/v1/scholars/export")
assert export_response.status_code == 200
export_payload = export_response.json()["data"]
assert export_payload["schema_version"] == 1
assert len(export_payload["scholars"]) == 1
assert len(export_payload["publications"]) == 1
import_response = client.post(
"/api/v1/scholars/import",
json={
"schema_version": 1,
"scholars": [
{
"scholar_id": "abcDEF123456",
"display_name": "Updated Scholar",
"is_enabled": False,
"profile_image_override_url": "https://cdn.example.com/avatar.png",
},
{
"scholar_id": "zzzYYY111222",
"display_name": "Imported Scholar",
"is_enabled": True,
"profile_image_override_url": None,
},
],
"publications": [
{
"scholar_id": "abcDEF123456",
"title": "Existing Publication",
"year": 2024,
"citation_count": 8,
"author_text": "A. Author",
"venue_text": "Test Venue",
"pub_url": "https://example.org/existing",
"pdf_url": "https://example.org/existing.pdf",
"is_read": True,
},
{
"scholar_id": "zzzYYY111222",
"title": "Imported Publication",
"year": 2025,
"citation_count": 2,
"author_text": "B. Author",
"venue_text": "Another Venue",
"pub_url": "https://example.org/imported",
"pdf_url": "https://example.org/imported.pdf",
"is_read": False,
},
],
},
headers=headers,
)
assert import_response.status_code == 200
import_data = import_response.json()["data"]
assert int(import_data["scholars_created"]) == 1
assert int(import_data["scholars_updated"]) >= 1
assert int(import_data["publications_created"]) == 1
assert int(import_data["links_created"]) == 1
updated_scholar_result = await db_session.execute(
text(
"""
SELECT display_name, is_enabled, profile_image_override_url
FROM scholar_profiles
WHERE user_id = :user_id AND scholar_id = :scholar_id
"""
),
{
"user_id": user_id,
"scholar_id": "abcDEF123456",
},
)
updated_scholar = updated_scholar_result.one()
assert updated_scholar[0] == "Updated Scholar"
assert updated_scholar[1] is False
assert updated_scholar[2] == "https://cdn.example.com/avatar.png"
imported_pub_result = await db_session.execute(
text(
"""
SELECT p.title_raw, p.pdf_url
FROM publications p
WHERE p.title_raw = :title
"""
),
{"title": "Imported Publication"},
)
imported_pub = imported_pub_result.one()
assert imported_pub[0] == "Imported Publication"
assert imported_pub[1] == "https://example.org/imported.pdf"
updated_link_result = await db_session.execute(
text(
"""
SELECT sp.is_read
FROM scholar_publications sp
JOIN scholar_profiles s ON s.id = sp.scholar_profile_id
JOIN publications p ON p.id = sp.publication_id
WHERE s.user_id = :user_id
AND s.scholar_id = :scholar_id
AND p.title_raw = :title
"""
),
{
"user_id": user_id,
"scholar_id": "abcDEF123456",
"title": "Existing Publication",
},
)
assert bool(updated_link_result.scalar_one()) is True

183
tests/integration/test_api_settings.py Normal file
View file

@ -0,0 +1,183 @@
from __future__ import annotations
from datetime import UTC, datetime, timedelta
import pytest
from fastapi.testclient import TestClient
from sqlalchemy.ext.asyncio import AsyncSession
from app.main import app
from app.services.settings import application as user_settings_service
from app.settings import settings
from tests.integration.helpers import (
api_csrf_headers,
assert_safety_state_contract,
insert_user,
login_user,
)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_settings_get_and_update(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-settings@example.com",
password="api-password",
)
client = TestClient(app)
login_user(client, email="api-settings@example.com", password="api-password")
headers = api_csrf_headers(client)
get_response = client.get("/api/v1/settings")
assert get_response.status_code == 200
settings_payload = get_response.json()["data"]
assert "request_delay_seconds" in settings_payload
assert "nav_visible_pages" in settings_payload
assert settings_payload["policy"]["min_run_interval_minutes"] == user_settings_service.resolve_run_interval_minimum(
settings.ingestion_min_run_interval_minutes
)
assert settings_payload["policy"][
"min_request_delay_seconds"
] == user_settings_service.resolve_request_delay_minimum(settings.ingestion_min_request_delay_seconds)
assert settings_payload["policy"]["automation_allowed"] is settings.ingestion_automation_allowed
assert settings_payload["policy"]["manual_run_allowed"] is settings.ingestion_manual_run_allowed
assert settings_payload["policy"]["blocked_failure_threshold"] == max(
1,
int(settings.ingestion_alert_blocked_failure_threshold),
)
assert settings_payload["policy"]["network_failure_threshold"] == max(
1,
int(settings.ingestion_alert_network_failure_threshold),
)
assert settings_payload["policy"]["cooldown_blocked_seconds"] == max(
60,
int(settings.ingestion_safety_cooldown_blocked_seconds),
)
assert settings_payload["policy"]["cooldown_network_seconds"] == max(
60,
int(settings.ingestion_safety_cooldown_network_seconds),
)
assert_safety_state_contract(settings_payload["safety_state"])
assert settings_payload["safety_state"]["cooldown_active"] is False
policy = settings_payload["policy"]
run_interval_minutes = max(45, int(policy["min_run_interval_minutes"]))
request_delay_seconds = max(6, int(policy["min_request_delay_seconds"]))
update_response = client.put(
"/api/v1/settings",
json={
"auto_run_enabled": True,
"run_interval_minutes": run_interval_minutes,
"request_delay_seconds": request_delay_seconds,
"nav_visible_pages": ["dashboard", "scholars", "publications", "settings", "runs"],
},
headers=headers,
)
assert update_response.status_code == 200
updated = update_response.json()["data"]
assert updated["auto_run_enabled"] is True
assert updated["run_interval_minutes"] == run_interval_minutes
assert updated["request_delay_seconds"] == request_delay_seconds
assert updated["nav_visible_pages"] == [
"dashboard",
"scholars",
"publications",
"settings",
"runs",
]
assert "policy" in updated
assert_safety_state_contract(updated["safety_state"])
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_settings_enforce_env_minimums(db_session: AsyncSession) -> None:
await insert_user(
db_session,
email="api-settings-policy@example.com",
password="api-password",
)
client = TestClient(app)
login_user(client, email="api-settings-policy@example.com", password="api-password")
headers = api_csrf_headers(client)
previous_min_interval = settings.ingestion_min_run_interval_minutes
previous_min_delay = settings.ingestion_min_request_delay_seconds
object.__setattr__(settings, "ingestion_min_run_interval_minutes", 30)
object.__setattr__(settings, "ingestion_min_request_delay_seconds", 8)
try:
interval_response = client.put(
"/api/v1/settings",
json={
"auto_run_enabled": True,
"run_interval_minutes": 29,
"request_delay_seconds": 9,
"nav_visible_pages": ["dashboard", "scholars", "settings"],
},
headers=headers,
)
assert interval_response.status_code == 400
assert interval_response.json()["error"]["code"] == "invalid_settings"
assert interval_response.json()["error"]["message"] == "Check interval must be at least 30 minutes."
delay_response = client.put(
"/api/v1/settings",
json={
"auto_run_enabled": True,
"run_interval_minutes": 30,
"request_delay_seconds": 7,
"nav_visible_pages": ["dashboard", "scholars", "settings"],
},
headers=headers,
)
assert delay_response.status_code == 400
assert delay_response.json()["error"]["code"] == "invalid_settings"
assert delay_response.json()["error"]["message"] == "Request delay must be at least 8 seconds."
finally:
object.__setattr__(settings, "ingestion_min_run_interval_minutes", previous_min_interval)
object.__setattr__(settings, "ingestion_min_request_delay_seconds", previous_min_delay)
@pytest.mark.integration
@pytest.mark.db
@pytest.mark.asyncio
async def test_api_settings_clears_expired_scrape_safety_cooldown(
db_session: AsyncSession,
) -> None:
user_id = await insert_user(
db_session,
email="api-settings-safety-expired@example.com",
password="api-password",
)
user_settings = await user_settings_service.get_or_create_settings(
db_session,
user_id=user_id,
)
user_settings.scrape_safety_state = {"blocked_start_count": 2}
user_settings.scrape_cooldown_reason = "blocked_failure_threshold_exceeded"
user_settings.scrape_cooldown_until = datetime.now(UTC) - timedelta(seconds=15)
await db_session.commit()
client = TestClient(app)
login_user(client, email="api-settings-safety-expired@example.com", password="api-password")
settings_response = client.get("/api/v1/settings")
assert settings_response.status_code == 200
settings_safety_state = settings_response.json()["data"]["safety_state"]
assert_safety_state_contract(settings_safety_state)
assert settings_safety_state["cooldown_active"] is False
assert settings_safety_state["cooldown_reason"] is None
assert int(settings_safety_state["counters"]["blocked_start_count"]) == 2
runs_response = client.get("/api/v1/runs")
assert runs_response.status_code == 200
runs_safety_state = runs_response.json()["data"]["safety_state"]
assert_safety_state_contract(runs_safety_state)
assert runs_safety_state["cooldown_active"] is False
assert runs_safety_state["cooldown_reason"] is None

2721
tests/integration/test_api_v1.py
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File diff suppressed because it is too large Load diff

2
tests/integration/test_fixture_probe_runs.py
View file

@ -95,7 +95,7 @@ async def test_fixture_probe_run_emits_failure_and_retry_summary_metrics(
"retry": "RSTUVWX12345",
}
for label in ("ok", "blocked", "retry"):
for label in ("ok", "retry", "blocked"):
await db_session.execute(
text(
"""

29
tests/integration/test_run_lifecycle_consistency.py
View file

@ -13,9 +13,29 @@ from app.api.runtime_deps import get_ingestion_service
from app.db.models import CrawlRun, Publication, RunStatus, RunTriggerType
from app.main import app
from app.services.ingestion.application import ScholarIngestionService
from app.services.ingestion.run_enrichment import background_enrich
from app.services.scholar.source import FetchResult
from tests.integration.helpers import insert_user, login_user
class _PassthroughSource:
"""Minimal source that passes preflight without making real requests."""
async def fetch_profile_html(self, scholar_id: str) -> FetchResult:
return FetchResult(
requested_url=f"https://scholar.google.com/citations?user={scholar_id}",
status_code=200,
final_url=f"https://scholar.google.com/citations?user={scholar_id}",
body="<html></html>",
error=None,
)
async def fetch_profile_page_html(
self, scholar_id: str, *, cstart: int, pagesize: int
) -> FetchResult:
return await self.fetch_profile_html(scholar_id)
def _csrf_headers(client: TestClient) -> dict[str, str]:
response = client.get("/api/v1/auth/me")
assert response.status_code == 200
@ -81,7 +101,7 @@ async def test_api_manual_run_conflicts_when_an_active_run_exists(
)
await db_session.commit()
service = ScholarIngestionService(source=object())
service = ScholarIngestionService(source=_PassthroughSource())
async def _stall_execute_run(**_kwargs: Any) -> None:
await asyncio.sleep(0.4)
@ -218,9 +238,12 @@ async def test_background_enrichment_preserves_canceled_status(
_OpenAlexClientStub,
)
service = ScholarIngestionService(source=object())
await service._background_enrich(
from app.services.ingestion.enrichment import EnrichmentRunner
enrichment_runner = EnrichmentRunner()
await background_enrich(
session_factory,
enrichment_runner,
run_id=int(run.id),
intended_final_status=RunStatus.SUCCESS,
)

40
tests/unit/test_logging_policy.py Normal file
View file

@ -0,0 +1,40 @@
from __future__ import annotations
import ast
from pathlib import Path
RAW_LOG_METHODS = {
"debug",
"info",
"warning",
"error",
"exception",
"critical",
}
APP_DIR = Path(__file__).resolve().parents[2] / "app"
def _raw_logger_calls(path: Path) -> list[tuple[int, str]]:
tree = ast.parse(path.read_text(encoding="utf-8"), filename=str(path))
violations: list[tuple[int, str]] = []
for node in ast.walk(tree):
if not isinstance(node, ast.Call):
continue
func = node.func
if not isinstance(func, ast.Attribute):
continue
if not isinstance(func.value, ast.Name) or func.value.id != "logger":
continue
if func.attr not in RAW_LOG_METHODS:
continue
violations.append((int(node.lineno), func.attr))
return violations
def test_app_runtime_uses_structured_log_only() -> None:
violations: list[str] = []
for path in sorted(APP_DIR.rglob("*.py")):
for line_number, method in _raw_logger_calls(path):
relative_path = path.relative_to(APP_DIR.parent)
violations.append(f"{relative_path}:{line_number} logger.{method}()")
assert not violations, "raw logger calls found:\n" + "\n".join(violations)

121
tests/unit/test_portability_import.py Normal file
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@ -0,0 +1,121 @@
from __future__ import annotations
from unittest.mock import MagicMock
from app.services.portability.publication_import import (
_build_imported_publication_input,
_initialize_import_counters,
_update_link_counters,
)
def _mock_profile(scholar_id: str = "ABC123DEF456") -> MagicMock:
profile = MagicMock()
profile.id = 1
profile.scholar_id = scholar_id
return profile
def _scholar_map(scholar_id: str = "ABC123DEF456") -> dict[str, MagicMock]:
return {scholar_id: _mock_profile(scholar_id)}
class TestBuildImportedPublicationInput:
def test_returns_parsed_input_for_valid_item(self) -> None:
item = {
"scholar_id": "ABC123DEF456",
"title": "Deep Learning",
"year": 2024,
"author_text": "Smith, J",
"venue_text": "ICML",
"citation_count": 10,
}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert result.title == "Deep Learning"
assert result.year == 2024
assert result.citation_count == 10
assert result.author_text == "Smith, J"
def test_returns_none_when_title_missing(self) -> None:
item = {"scholar_id": "ABC123DEF456"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is None
def test_returns_none_when_scholar_id_missing(self) -> None:
item = {"title": "Test Title"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is None
def test_returns_none_when_scholar_not_in_map(self) -> None:
item = {"scholar_id": "UNKNOWN12345", "title": "Test Title"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is None
def test_defaults_is_read_to_false(self) -> None:
item = {"scholar_id": "ABC123DEF456", "title": "Test Title"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert result.is_read is False
def test_respects_is_read_true(self) -> None:
item = {"scholar_id": "ABC123DEF456", "title": "Test Title", "is_read": True}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert result.is_read is True
def test_normalizes_year(self) -> None:
item = {"scholar_id": "ABC123DEF456", "title": "Test Title", "year": "invalid"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert result.year is None
def test_normalizes_citation_count(self) -> None:
item = {"scholar_id": "ABC123DEF456", "title": "Test Title", "citation_count": "not_a_number"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert result.citation_count == 0
def test_computes_fingerprint_when_not_provided(self) -> None:
item = {"scholar_id": "ABC123DEF456", "title": "Test Title"}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert len(result.fingerprint) == 64
def test_uses_provided_valid_fingerprint(self) -> None:
valid_sha = "b" * 64
item = {"scholar_id": "ABC123DEF456", "title": "Test Title", "fingerprint_sha256": valid_sha}
result = _build_imported_publication_input(item=item, scholar_map=_scholar_map())
assert result is not None
assert result.fingerprint == valid_sha
class TestInitializeImportCounters:
def test_adds_publication_and_link_keys(self) -> None:
counters: dict[str, int] = {"existing_key": 5}
_initialize_import_counters(counters)
assert counters["publications_created"] == 0
assert counters["publications_updated"] == 0
assert counters["links_created"] == 0
assert counters["links_updated"] == 0
assert counters["existing_key"] == 5
class TestUpdateLinkCounters:
def test_increments_created(self) -> None:
counters = {"links_created": 0, "links_updated": 0}
_update_link_counters(counters=counters, link_created=True, link_updated=False)
assert counters["links_created"] == 1
assert counters["links_updated"] == 0
def test_increments_updated(self) -> None:
counters = {"links_created": 0, "links_updated": 0}
_update_link_counters(counters=counters, link_created=False, link_updated=True)
assert counters["links_created"] == 0
assert counters["links_updated"] == 1
def test_no_change_when_both_false(self) -> None:
counters = {"links_created": 0, "links_updated": 0}
_update_link_counters(counters=counters, link_created=False, link_updated=False)
assert counters["links_created"] == 0
assert counters["links_updated"] == 0

193
tests/unit/test_portability_normalize.py Normal file
View file

@ -0,0 +1,193 @@
from __future__ import annotations
import pytest
from app.services.portability.constants import MAX_IMPORT_PUBLICATIONS, MAX_IMPORT_SCHOLARS
from app.services.portability.normalize import (
_build_fingerprint,
_first_author_last_name,
_first_venue_word,
_normalize_citation_count,
_normalize_optional_text,
_normalize_optional_year,
_resolve_fingerprint,
_validate_import_sizes,
)
from app.services.portability.types import ImportExportError
class TestNormalizeOptionalText:
def test_returns_stripped_string(self) -> None:
assert _normalize_optional_text(" hello ") == "hello"
def test_returns_none_for_none(self) -> None:
assert _normalize_optional_text(None) is None
def test_returns_none_for_empty_string(self) -> None:
assert _normalize_optional_text("") is None
def test_returns_none_for_whitespace_only(self) -> None:
assert _normalize_optional_text(" ") is None
def test_coerces_non_string_to_string(self) -> None:
assert _normalize_optional_text(42) == "42"
class TestNormalizeOptionalYear:
def test_valid_year(self) -> None:
assert _normalize_optional_year(2024) == 2024
def test_string_year(self) -> None:
assert _normalize_optional_year("1999") == 1999
def test_returns_none_for_none(self) -> None:
assert _normalize_optional_year(None) is None
def test_returns_none_for_non_numeric(self) -> None:
assert _normalize_optional_year("abc") is None
def test_returns_none_for_year_below_1500(self) -> None:
assert _normalize_optional_year(1499) is None
def test_returns_none_for_year_above_3000(self) -> None:
assert _normalize_optional_year(3001) is None
def test_boundary_1500_accepted(self) -> None:
assert _normalize_optional_year(1500) == 1500
def test_boundary_3000_accepted(self) -> None:
assert _normalize_optional_year(3000) == 3000
class TestNormalizeCitationCount:
def test_valid_positive(self) -> None:
assert _normalize_citation_count(10) == 10
def test_zero(self) -> None:
assert _normalize_citation_count(0) == 0
def test_negative_clamped_to_zero(self) -> None:
assert _normalize_citation_count(-5) == 0
def test_string_number(self) -> None:
assert _normalize_citation_count("42") == 42
def test_none_returns_zero(self) -> None:
assert _normalize_citation_count(None) == 0
def test_invalid_string_returns_zero(self) -> None:
assert _normalize_citation_count("abc") == 0
class TestFirstAuthorLastName:
def test_single_author(self) -> None:
assert _first_author_last_name("John Smith") == "smith"
def test_multiple_authors(self) -> None:
assert _first_author_last_name("Jane Doe, John Smith") == "doe"
def test_empty_string(self) -> None:
assert _first_author_last_name("") == ""
def test_none(self) -> None:
assert _first_author_last_name(None) == ""
class TestFirstVenueWord:
def test_returns_first_word(self) -> None:
assert _first_venue_word("Nature Communications") == "nature"
def test_empty_string(self) -> None:
assert _first_venue_word("") == ""
def test_none(self) -> None:
assert _first_venue_word(None) == ""
class TestBuildFingerprint:
def test_produces_64_hex_digest(self) -> None:
fp = _build_fingerprint(title="Test Title", year=2024, author_text="Smith", venue_text="ICML")
assert len(fp) == 64
assert all(c in "0123456789abcdef" for c in fp)
def test_deterministic(self) -> None:
kwargs = {"title": "Test Title", "year": 2024, "author_text": "Smith", "venue_text": "ICML"}
assert _build_fingerprint(**kwargs) == _build_fingerprint(**kwargs)
def test_different_titles_produce_different_fingerprints(self) -> None:
fp1 = _build_fingerprint(title="Title A", year=2024, author_text=None, venue_text=None)
fp2 = _build_fingerprint(title="Title B", year=2024, author_text=None, venue_text=None)
assert fp1 != fp2
def test_none_year_handled(self) -> None:
fp = _build_fingerprint(title="Test", year=None, author_text=None, venue_text=None)
assert len(fp) == 64
class TestResolveFingerprint:
def test_uses_provided_valid_sha256(self) -> None:
valid_sha = "a" * 64
result = _resolve_fingerprint(
title="Test",
year=2024,
author_text=None,
venue_text=None,
provided_fingerprint=valid_sha,
)
assert result == valid_sha
def test_computes_fingerprint_when_provided_is_none(self) -> None:
result = _resolve_fingerprint(
title="Test",
year=2024,
author_text=None,
venue_text=None,
provided_fingerprint=None,
)
assert len(result) == 64
def test_computes_fingerprint_when_provided_is_invalid(self) -> None:
result = _resolve_fingerprint(
title="Test",
year=2024,
author_text=None,
venue_text=None,
provided_fingerprint="not-a-sha",
)
assert len(result) == 64
def test_normalizes_provided_to_lowercase(self) -> None:
valid_sha = "A" * 64
result = _resolve_fingerprint(
title="Test",
year=2024,
author_text=None,
venue_text=None,
provided_fingerprint=valid_sha,
)
assert result == "a" * 64
class TestValidateImportSizes:
def test_accepts_within_limits(self) -> None:
_validate_import_sizes(scholars=[{}], publications=[{}])
def test_rejects_too_many_scholars(self) -> None:
with pytest.raises(ImportExportError, match="max scholars"):
_validate_import_sizes(
scholars=[{}] * (MAX_IMPORT_SCHOLARS + 1),
publications=[],
)
def test_rejects_too_many_publications(self) -> None:
with pytest.raises(ImportExportError, match="max publications"):
_validate_import_sizes(
scholars=[],
publications=[{}] * (MAX_IMPORT_PUBLICATIONS + 1),
)
def test_accepts_exact_limit(self) -> None:
_validate_import_sizes(
scholars=[{}] * MAX_IMPORT_SCHOLARS,
publications=[{}] * MAX_IMPORT_PUBLICATIONS,
)

142
tests/unit/test_scholar_validators.py Normal file
View file

@ -0,0 +1,142 @@
from __future__ import annotations
import os
import tempfile
import pytest
from app.services.scholars.constants import MAX_IMAGE_URL_LENGTH
from app.services.scholars.exceptions import ScholarServiceError
from app.services.scholars.uploads import (
_ensure_upload_root,
_resolve_upload_path,
_safe_remove_upload,
resolve_upload_file_path,
)
from app.services.scholars.validators import (
normalize_display_name,
normalize_profile_image_url,
validate_scholar_id,
)
class TestValidateScholarId:
def test_valid_12_char_id(self) -> None:
assert validate_scholar_id("ABCDEF123456") == "ABCDEF123456"
def test_valid_with_hyphens_and_underscores(self) -> None:
assert validate_scholar_id("AB-CD_EF1234") == "AB-CD_EF1234"
def test_strips_whitespace(self) -> None:
assert validate_scholar_id(" ABCDEF123456 ") == "ABCDEF123456"
def test_rejects_too_short(self) -> None:
with pytest.raises(ScholarServiceError, match="12"):
validate_scholar_id("ABC123")
def test_rejects_too_long(self) -> None:
with pytest.raises(ScholarServiceError, match="12"):
validate_scholar_id("ABCDEF1234567")
def test_rejects_special_characters(self) -> None:
with pytest.raises(ScholarServiceError, match="12"):
validate_scholar_id("ABCDEF12345!")
class TestNormalizeDisplayName:
def test_returns_stripped_name(self) -> None:
assert normalize_display_name(" John Doe ") == "John Doe"
def test_returns_none_for_empty(self) -> None:
assert normalize_display_name("") is None
def test_returns_none_for_whitespace_only(self) -> None:
assert normalize_display_name(" ") is None
def test_preserves_non_empty(self) -> None:
assert normalize_display_name("A") == "A"
class TestNormalizeProfileImageUrl:
def test_valid_https_url(self) -> None:
assert normalize_profile_image_url("https://example.com/img.png") == "https://example.com/img.png"
def test_valid_http_url(self) -> None:
assert normalize_profile_image_url("http://example.com/img.png") == "http://example.com/img.png"
def test_returns_none_for_none(self) -> None:
assert normalize_profile_image_url(None) is None
def test_returns_none_for_empty(self) -> None:
assert normalize_profile_image_url("") is None
def test_returns_none_for_whitespace(self) -> None:
assert normalize_profile_image_url(" ") is None
def test_rejects_ftp_scheme(self) -> None:
with pytest.raises(ScholarServiceError, match="http"):
normalize_profile_image_url("ftp://example.com/img.png")
def test_rejects_no_scheme(self) -> None:
with pytest.raises(ScholarServiceError, match="http"):
normalize_profile_image_url("example.com/img.png")
def test_rejects_url_too_long(self) -> None:
long_url = "https://example.com/" + "a" * MAX_IMAGE_URL_LENGTH
with pytest.raises(ScholarServiceError, match="characters or fewer"):
normalize_profile_image_url(long_url)
def test_accepts_url_at_max_length(self) -> None:
url = "https://example.com/" + "a" * (MAX_IMAGE_URL_LENGTH - len("https://example.com/"))
assert len(url) == MAX_IMAGE_URL_LENGTH
assert normalize_profile_image_url(url) == url
class TestUploadPathSafety:
def test_resolve_upload_path_rejects_traversal(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
root = _ensure_upload_root(tmpdir, create=False)
with pytest.raises(ScholarServiceError, match="Invalid"):
_resolve_upload_path(root, "../../../etc/passwd")
def test_resolve_upload_path_accepts_valid_relative(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
root = _ensure_upload_root(tmpdir, create=False)
result = _resolve_upload_path(root, "scholar_img.png")
assert result.name == "scholar_img.png"
assert root in result.parents or root == result.parent
def test_ensure_upload_root_creates_directory(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
new_dir = os.path.join(tmpdir, "uploads", "images")
root = _ensure_upload_root(new_dir, create=True)
assert root.exists()
def test_safe_remove_upload_removes_existing_file(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
root = _ensure_upload_root(tmpdir, create=False)
test_file = root / "test.png"
test_file.write_bytes(b"fake image")
assert test_file.exists()
_safe_remove_upload(root, "test.png")
assert not test_file.exists()
def test_safe_remove_upload_ignores_missing_file(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
root = _ensure_upload_root(tmpdir, create=False)
_safe_remove_upload(root, "nonexistent.png")
def test_safe_remove_upload_ignores_none(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
root = _ensure_upload_root(tmpdir, create=False)
_safe_remove_upload(root, None)
def test_safe_remove_upload_ignores_traversal_path(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
root = _ensure_upload_root(tmpdir, create=False)
_safe_remove_upload(root, "../../../etc/passwd")
def test_resolve_upload_file_path(self) -> None:
with tempfile.TemporaryDirectory() as tmpdir:
result = resolve_upload_file_path(upload_dir=tmpdir, relative_path="img.png")
assert result.name == "img.png"

79
tests/unit/test_user_validation.py Normal file
View file

@ -0,0 +1,79 @@
from __future__ import annotations
import pytest
from app.services.users.application import (
UserServiceError,
normalize_email,
validate_email,
validate_password,
)
class TestNormalizeEmail:
def test_lowercases_and_strips(self) -> None:
assert normalize_email(" Alice@Example.COM ") == "alice@example.com"
def test_already_normalized(self) -> None:
assert normalize_email("user@example.com") == "user@example.com"
class TestValidateEmail:
def test_valid_email(self) -> None:
assert validate_email("user@example.com") == "user@example.com"
def test_strips_and_lowercases(self) -> None:
assert validate_email(" User@Example.COM ") == "user@example.com"
def test_rejects_missing_at(self) -> None:
with pytest.raises(UserServiceError, match="valid email"):
validate_email("userexample.com")
def test_rejects_missing_domain(self) -> None:
with pytest.raises(UserServiceError, match="valid email"):
validate_email("user@")
def test_rejects_missing_tld(self) -> None:
with pytest.raises(UserServiceError, match="valid email"):
validate_email("user@example")
def test_rejects_empty_string(self) -> None:
with pytest.raises(UserServiceError, match="valid email"):
validate_email("")
def test_rejects_whitespace_only(self) -> None:
with pytest.raises(UserServiceError, match="valid email"):
validate_email(" ")
def test_rejects_spaces_in_local_part(self) -> None:
with pytest.raises(UserServiceError, match="valid email"):
validate_email("us er@example.com")
def test_accepts_plus_addressing(self) -> None:
assert validate_email("user+tag@example.com") == "user+tag@example.com"
def test_accepts_dots_in_local(self) -> None:
assert validate_email("first.last@example.com") == "first.last@example.com"
class TestValidatePassword:
def test_valid_password(self) -> None:
assert validate_password("securepass") == "securepass"
def test_exactly_8_characters(self) -> None:
assert validate_password("12345678") == "12345678"
def test_rejects_7_characters(self) -> None:
with pytest.raises(UserServiceError, match="at least 8"):
validate_password("1234567")
def test_rejects_empty(self) -> None:
with pytest.raises(UserServiceError, match="at least 8"):
validate_password("")
def test_strips_whitespace(self) -> None:
assert validate_password(" securepass ") == "securepass"
def test_whitespace_only_too_short(self) -> None:
with pytest.raises(UserServiceError, match="at least 8"):
validate_password(" ")