harden domain architecture and add lazy Crossref+Unpaywall PDF enrichment with publications workspace refactor

This commit is contained in:
Justin Visser 2026-02-20 22:56:52 +01:00
parent a527e7a535
commit 01454162bb
62 changed files with 2562 additions and 688 deletions

View file

@ -21,10 +21,10 @@ from app.api.schemas import (
)
from app.db.models import RunStatus, RunTriggerType, User
from app.db.session import get_db_session
from app.services import ingestion as ingestion_service
from app.services import run_safety as run_safety_service
from app.services import runs as run_service
from app.services import user_settings as user_settings_service
from app.services.domains.ingestion import application as ingestion_service
from app.services.domains.ingestion import safety as run_safety_service
from app.services.domains.runs import application as run_service
from app.services.domains.settings import application as user_settings_service
from app.settings import settings
from app.api.runtime_deps import get_ingestion_service
@ -294,10 +294,228 @@ async def _load_safety_state(
"metric_name": "api_runs_safety_cooldown_cleared_total",
"metric_value": 1,
},
)
)
return run_safety_service.get_safety_state_payload(user_settings)
def _raise_manual_runs_disabled(*, user_id: int, safety_state: dict[str, Any]) -> None:
logger.warning(
"api.runs.manual_blocked_policy",
extra={
"event": "api.runs.manual_blocked_policy",
"user_id": user_id,
"policy": {"manual_run_allowed": False},
"safety_state": safety_state,
"metric_name": "api_runs_manual_blocked_policy_total",
"metric_value": 1,
},
)
raise ApiException(
status_code=403,
code="manual_runs_disabled",
message="Manual checks are disabled by server policy.",
details={
"policy": {"manual_run_allowed": False},
"safety_state": safety_state,
},
)
async def _reused_manual_run_payload(
db_session: AsyncSession,
*,
request: Request,
user_id: int,
idempotency_key: str | None,
safety_state: dict[str, Any],
) -> dict[str, Any] | None:
if idempotency_key is None:
return None
previous_run = await run_service.get_manual_run_by_idempotency_key(
db_session,
user_id=user_id,
idempotency_key=idempotency_key,
)
if previous_run is None:
return None
if previous_run.status == RunStatus.RUNNING:
raise ApiException(
status_code=409,
code="run_in_progress",
message="A run with this idempotency key is still in progress.",
details={"run_id": int(previous_run.id), "idempotency_key": idempotency_key},
)
return success_payload(
request,
data=_manual_run_payload_from_run(
previous_run,
idempotency_key=idempotency_key,
reused_existing_run=True,
safety_state=safety_state,
),
)
async def _run_ingestion_for_manual(
db_session: AsyncSession,
*,
ingest_service: ingestion_service.ScholarIngestionService,
user_id: int,
idempotency_key: str | None,
):
user_settings = await user_settings_service.get_or_create_settings(
db_session,
user_id=user_id,
)
return await ingest_service.run_for_user(
db_session,
user_id=user_id,
trigger_type=RunTriggerType.MANUAL,
request_delay_seconds=user_settings.request_delay_seconds,
network_error_retries=settings.ingestion_network_error_retries,
retry_backoff_seconds=settings.ingestion_retry_backoff_seconds,
max_pages_per_scholar=settings.ingestion_max_pages_per_scholar,
page_size=settings.ingestion_page_size,
auto_queue_continuations=settings.ingestion_continuation_queue_enabled,
queue_delay_seconds=settings.ingestion_continuation_base_delay_seconds,
idempotency_key=idempotency_key,
alert_blocked_failure_threshold=settings.ingestion_alert_blocked_failure_threshold,
alert_network_failure_threshold=settings.ingestion_alert_network_failure_threshold,
alert_retry_scheduled_threshold=settings.ingestion_alert_retry_scheduled_threshold,
)
async def _recover_integrity_error(
db_session: AsyncSession,
*,
request: Request,
user_id: int,
idempotency_key: str | None,
original_exc: IntegrityError,
) -> dict[str, Any]:
if idempotency_key is None:
logger.exception(
"api.runs.manual_integrity_error",
extra={"event": "api.runs.manual_integrity_error", "user_id": user_id},
)
raise ApiException(status_code=500, code="manual_run_failed", message="Manual run failed.") from original_exc
existing_run = await run_service.get_manual_run_by_idempotency_key(
db_session,
user_id=user_id,
idempotency_key=idempotency_key,
)
if existing_run is None:
logger.exception(
"api.runs.manual_integrity_error",
extra={"event": "api.runs.manual_integrity_error", "user_id": user_id},
)
raise ApiException(status_code=500, code="manual_run_failed", message="Manual run failed.") from original_exc
if existing_run.status == RunStatus.RUNNING:
raise ApiException(
status_code=409,
code="run_in_progress",
message="A run with this idempotency key is still in progress.",
details={"run_id": int(existing_run.id), "idempotency_key": idempotency_key},
) from original_exc
return success_payload(
request,
data=_manual_run_payload_from_run(
existing_run,
idempotency_key=idempotency_key,
reused_existing_run=True,
safety_state=await _load_safety_state(db_session, user_id=user_id),
),
)
async def _execute_manual_run(
db_session: AsyncSession,
*,
request: Request,
ingest_service: ingestion_service.ScholarIngestionService,
user_id: int,
idempotency_key: str | None,
):
try:
return await _run_ingestion_for_manual(
db_session,
ingest_service=ingest_service,
user_id=user_id,
idempotency_key=idempotency_key,
)
except ingestion_service.RunAlreadyInProgressError as exc:
await db_session.rollback()
raise ApiException(
status_code=409,
code="run_in_progress",
message="A run is already in progress for this account.",
) from exc
except ingestion_service.RunBlockedBySafetyPolicyError as exc:
await db_session.rollback()
_raise_manual_blocked_safety(exc=exc, user_id=user_id)
except IntegrityError as exc:
await db_session.rollback()
return await _recover_integrity_error(
db_session,
request=request,
user_id=user_id,
idempotency_key=idempotency_key,
original_exc=exc,
)
except Exception as exc:
await db_session.rollback()
_raise_manual_failed(exc=exc, user_id=user_id)
def _raise_manual_blocked_safety(*, exc, user_id: int) -> None:
logger.info(
"api.runs.manual_blocked_safety",
extra={
"event": "api.runs.manual_blocked_safety",
"user_id": user_id,
"reason": exc.safety_state.get("cooldown_reason"),
"cooldown_until": exc.safety_state.get("cooldown_until"),
"cooldown_remaining_seconds": exc.safety_state.get("cooldown_remaining_seconds"),
"metric_name": "api_runs_manual_blocked_safety_total",
"metric_value": 1,
},
)
raise ApiException(
status_code=429,
code=exc.code,
message=exc.message,
details={"safety_state": exc.safety_state},
) from exc
def _raise_manual_failed(*, exc: Exception, user_id: int) -> None:
logger.exception(
"api.runs.manual_failed",
extra={"event": "api.runs.manual_failed", "user_id": user_id},
)
raise ApiException(status_code=500, code="manual_run_failed", message="Manual run failed.") from exc
def _manual_run_success_payload(
*,
run_summary,
idempotency_key: str | None,
safety_state: dict[str, Any],
) -> dict[str, Any]:
return {
"run_id": run_summary.crawl_run_id,
"status": run_summary.status.value,
"scholar_count": run_summary.scholar_count,
"succeeded_count": run_summary.succeeded_count,
"failed_count": run_summary.failed_count,
"partial_count": run_summary.partial_count,
"new_publication_count": run_summary.new_publication_count,
"reused_existing_run": False,
"idempotency_key": idempotency_key,
"safety_state": safety_state,
}
@router.get(
"",
response_model=RunsListEnvelope,
@ -383,164 +601,28 @@ async def run_manual(
user_id=current_user.id,
)
if not settings.ingestion_manual_run_allowed:
logger.warning(
"api.runs.manual_blocked_policy",
extra={
"event": "api.runs.manual_blocked_policy",
"user_id": current_user.id,
"policy": {"manual_run_allowed": False},
"safety_state": safety_state,
"metric_name": "api_runs_manual_blocked_policy_total",
"metric_value": 1,
},
)
raise ApiException(
status_code=403,
code="manual_runs_disabled",
message="Manual checks are disabled by server policy.",
details={
"policy": {
"manual_run_allowed": False,
},
"safety_state": safety_state,
},
)
_raise_manual_runs_disabled(user_id=current_user.id, safety_state=safety_state)
idempotency_key = _normalize_idempotency_key(request.headers.get(IDEMPOTENCY_HEADER))
if idempotency_key is not None:
previous_run = await run_service.get_manual_run_by_idempotency_key(
db_session,
user_id=current_user.id,
idempotency_key=idempotency_key,
)
if previous_run is not None:
if previous_run.status == RunStatus.RUNNING:
raise ApiException(
status_code=409,
code="run_in_progress",
message="A run with this idempotency key is still in progress.",
details={
"run_id": int(previous_run.id),
"idempotency_key": idempotency_key,
},
)
return success_payload(
request,
data=_manual_run_payload_from_run(
previous_run,
idempotency_key=idempotency_key,
reused_existing_run=True,
safety_state=safety_state,
),
)
user_settings = await user_settings_service.get_or_create_settings(
reused_payload = await _reused_manual_run_payload(
db_session,
request=request,
user_id=current_user.id,
idempotency_key=idempotency_key,
safety_state=safety_state,
)
try:
run_summary = await ingest_service.run_for_user(
db_session,
user_id=current_user.id,
trigger_type=RunTriggerType.MANUAL,
request_delay_seconds=user_settings.request_delay_seconds,
network_error_retries=settings.ingestion_network_error_retries,
retry_backoff_seconds=settings.ingestion_retry_backoff_seconds,
max_pages_per_scholar=settings.ingestion_max_pages_per_scholar,
page_size=settings.ingestion_page_size,
auto_queue_continuations=settings.ingestion_continuation_queue_enabled,
queue_delay_seconds=settings.ingestion_continuation_base_delay_seconds,
idempotency_key=idempotency_key,
alert_blocked_failure_threshold=settings.ingestion_alert_blocked_failure_threshold,
alert_network_failure_threshold=settings.ingestion_alert_network_failure_threshold,
alert_retry_scheduled_threshold=settings.ingestion_alert_retry_scheduled_threshold,
)
except ingestion_service.RunAlreadyInProgressError as exc:
await db_session.rollback()
raise ApiException(
status_code=409,
code="run_in_progress",
message="A run is already in progress for this account.",
) from exc
except ingestion_service.RunBlockedBySafetyPolicyError as exc:
await db_session.rollback()
logger.info(
"api.runs.manual_blocked_safety",
extra={
"event": "api.runs.manual_blocked_safety",
"user_id": current_user.id,
"reason": exc.safety_state.get("cooldown_reason"),
"cooldown_until": exc.safety_state.get("cooldown_until"),
"cooldown_remaining_seconds": exc.safety_state.get("cooldown_remaining_seconds"),
"metric_name": "api_runs_manual_blocked_safety_total",
"metric_value": 1,
},
)
raise ApiException(
status_code=429,
code=exc.code,
message=exc.message,
details={
"safety_state": exc.safety_state,
},
) from exc
except IntegrityError as exc:
await db_session.rollback()
if idempotency_key is not None:
existing_run = await run_service.get_manual_run_by_idempotency_key(
db_session,
user_id=current_user.id,
idempotency_key=idempotency_key,
)
if existing_run is not None:
if existing_run.status == RunStatus.RUNNING:
raise ApiException(
status_code=409,
code="run_in_progress",
message="A run with this idempotency key is still in progress.",
details={
"run_id": int(existing_run.id),
"idempotency_key": idempotency_key,
},
) from exc
return success_payload(
request,
data=_manual_run_payload_from_run(
existing_run,
idempotency_key=idempotency_key,
reused_existing_run=True,
safety_state=await _load_safety_state(
db_session,
user_id=current_user.id,
),
),
)
logger.exception(
"api.runs.manual_integrity_error",
extra={
"event": "api.runs.manual_integrity_error",
"user_id": current_user.id,
},
)
raise ApiException(
status_code=500,
code="manual_run_failed",
message="Manual run failed.",
) from exc
except Exception as exc:
await db_session.rollback()
logger.exception(
"api.runs.manual_failed",
extra={
"event": "api.runs.manual_failed",
"user_id": current_user.id,
},
)
raise ApiException(
status_code=500,
code="manual_run_failed",
message="Manual run failed.",
) from exc
if reused_payload is not None:
return reused_payload
run_summary = await _execute_manual_run(
db_session,
request=request,
ingest_service=ingest_service,
user_id=current_user.id,
idempotency_key=idempotency_key,
)
if isinstance(run_summary, dict):
return run_summary
current_safety_state = await _load_safety_state(
db_session,
@ -548,18 +630,11 @@ async def run_manual(
)
return success_payload(
request,
data={
"run_id": run_summary.crawl_run_id,
"status": run_summary.status.value,
"scholar_count": run_summary.scholar_count,
"succeeded_count": run_summary.succeeded_count,
"failed_count": run_summary.failed_count,
"partial_count": run_summary.partial_count,
"new_publication_count": run_summary.new_publication_count,
"reused_existing_run": False,
"idempotency_key": idempotency_key,
"safety_state": current_safety_state,
},
data=_manual_run_success_payload(
run_summary=run_summary,
idempotency_key=idempotency_key,
safety_state=current_safety_state,
),
)